Construct: ORF ccsbBroadEn_09075
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006553.1_s300c1, BRDN0000389096
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NIPA2 (81614)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_001008860.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 2 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_001008892.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 3 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_001184889.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 4 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_030922.6 | 99.8% | 99.7% | 6C>T;907A>G |
| 5 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272546.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 6 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272547.4 | 99.8% | 99.7% | 6C>T;907A>G |
| 7 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272548.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 8 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272550.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 9 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272552.4 | 99.8% | 99.7% | 6C>T;907A>G |
| 10 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_005272553.5 | 99.8% | 99.7% | 6C>T;907A>G |
| 11 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_006720364.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 12 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_006720365.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 13 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_006720366.4 | 99.8% | 99.7% | 6C>T;907A>G |
| 14 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_011543877.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 15 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_011543878.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 16 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_011543879.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 17 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_011543880.3 | 99.8% | 99.7% | 6C>T;907A>G |
| 18 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022645.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 19 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022646.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 20 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022647.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 21 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022648.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 22 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022649.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 23 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022650.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 24 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022651.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 25 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022652.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 26 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022653.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 27 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022654.2 | 99.8% | 99.7% | 6C>T;907A>G |
| 28 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_024450083.1 | 99.8% | 99.7% | 6C>T;907A>G |
| 29 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_001008894.2 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 30 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | NM_001184888.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 31 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_006720367.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 32 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022655.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 33 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022656.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 34 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022657.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 35 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022658.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 36 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022659.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 37 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022660.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 38 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022661.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 39 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022662.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 40 | human | 81614 | NIPA2 | NIPA magnesium transporter 2 | XM_017022663.1 | 94.5% | 94.1% | 6C>T;139_140ins57;850A>G |
| 41 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | NM_001256130.1 | 90.2% | 95.2% | (many diffs) |
| 42 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | NM_001256131.1 | 90.2% | 95.2% | (many diffs) |
| 43 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | NM_001256132.1 | 90.2% | 95.2% | (many diffs) |
| 44 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | NM_023647.6 | 90.2% | 95.2% | (many diffs) |
| 45 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | XM_006541324.3 | 90.2% | 95.2% | (many diffs) |
| 46 | mouse | 93790 | Nipa2 | non imprinted in Prader-Wil... | NM_001256133.1 | 73.2% | 77.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1146
- ORF length:
- 1080
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TCAGGGGCGT GGAAAATATG ACTTCTATAT TGGTCTGGGA TTGGCTATGA 121 GCTCCAGCAT TTTCATTGGA GGAAGTTTCA TTTTGAAAAA AAAGGGCCTC CTTCGACTTG 181 CCAGGAAAGG CTCTATGAGA GCAGGTCAAG GTGGCCATGC ATATCTTAAG GAATGGTTGT 241 GGTGGGCTGG ACTGCTGTCA ATGGGAGCTG GTGAGGTGGC CAACTTCGCT GCGTATGCGT 301 TTGCACCAGC CACTCTAGTG ACTCCACTAG GAGCTCTCAG CGTGCTAGTA AGTGCCATTC 361 TTTCTTCATA CTTTCTCAAT GAAAGACTTA ATCTTCATGG GAAAATTGGG TGTTTGCTAA 421 GTATTCTAGG ATCTACAGTT ATGGTCATTC ATGCTCCAAA GGAAGAGGAG ATTGAGACTT 481 TAAATGAAAT GTCTCACAAG CTAGGTGATC CAGGTTTTGT GGTCTTTGCA ACCCTTGTGG 541 TCATTGTGGC CTTGATATTA ATCTTCGTGG TGGGTCCTCG CCATGGACAG ACAAACATTC 601 TTGTGTACAT AACAATCTGC TCTGTAATCG GCGCGTTTTC AGTCTCCTGT GTGAAGGGCC 661 TGGGCATTGC TATCAAGGAG CTGTTTGCAG GGAAGCCTGT GCTGCGGCAT CCCCTGGCTT 721 GGATTCTGCT GCTGAGCCTC ATCGTCTGTG TGAGCACACA GATTAATTAC CTAAATAGGG 781 CCCTGGATAT ATTCAACACT TCCATTGTGA CTCCAATATA TTATGTATTC TTTACAACAT 841 CAGTTTTAAC TTGTTCAGCT ATTCTTTTTA AGGAGTGGCA AGATATGCCT GTTGACGATG 901 TCATTGGTAC TTTGAGTGGC TTCTTTACAA TCATTGTGGG GATATTCTTG TTGCATGCCT 961 TTAAAGACGT CGGCTTTAGT CTAGCAAGTC TGCCTGTGTC TTTTCGAAAA GACGAGAAAG 1021 CAATGAATGG CAATCTCTCT AATATGTATG AAGTTCTTAA TAATAATGAA GAAAGCTTAA 1081 CCTGTGGAAT CGAACAACAC ACTGGTGAAA ATGTCTCCCG AAGAAATGGA AATCTGACAG 1141 CTTTTTACCC AATTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1201 gttgcaacga ac