Construct: ORF ccsbBroadEn_09077
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004259.1_s300c1, BRDN0000385894
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CAB39L (81617)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81617 | CAB39L | calcium binding protein 39 ... | NM_001079670.3 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 2 | human | 81617 | CAB39L | calcium binding protein 39 ... | NM_001287337.2 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 3 | human | 81617 | CAB39L | calcium binding protein 39 ... | NM_001287338.1 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 4 | human | 81617 | CAB39L | calcium binding protein 39 ... | NM_001287339.1 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 5 | human | 81617 | CAB39L | calcium binding protein 39 ... | NM_030925.4 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 6 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_011535254.3 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 7 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_011535255.3 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 8 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_011535256.3 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 9 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_017020785.2 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 10 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_017020786.2 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 11 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_017020787.2 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 12 | human | 81617 | CAB39L | calcium binding protein 39 ... | XM_017020788.2 | 99.7% | 99.7% | 186A>G;237A>G;278G>A |
| 13 | mouse | 69008 | Cab39l | calcium binding protein 39-... | NM_026908.3 | 90.5% | 98.2% | (many diffs) |
| 14 | mouse | 69008 | Cab39l | calcium binding protein 39-... | XM_006519494.2 | 90.5% | 98.2% | (many diffs) |
| 15 | mouse | 69008 | Cab39l | calcium binding protein 39-... | XM_006519495.2 | 90.5% | 98.2% | (many diffs) |
| 16 | mouse | 69008 | Cab39l | calcium binding protein 39-... | XM_017316176.1 | 90.5% | 98.2% | (many diffs) |
| 17 | mouse | 69008 | Cab39l | calcium binding protein 39-... | XM_017316177.1 | 84.9% | 92.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1077
- ORF length:
- 1011
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 CTGGCATGAA AAAAATGCCT TTGTTTAGTA AATCACACAA AAATCCAGCA GAAATTGTGA 121 AAATCCTGAA AGACAATTTG GCCATTTTGG AAAAGCAAGA CAAAAAGACA GACAAGGCTT 181 CAGAAGAAGT GTCTAAATCA CTGCAAGCAA TGAAAGAAAT TCTGTGTGGT ACAAACGAGA 241 AAGAACCCCC GACAGAAGCA GTGGCTCAGC TAGCACAAGA ACTCTACAGC AGTGGCCTGC 301 TGGTGACACT GATAGCTGAC CTGCAGCTGA TAGACTTTGA GGAAAAAAAA GATGTGACCC 361 AGATATTTAA CAACATCTTG AGAAGACAGA TAGGCACTCG GAGTCCTACT GTGGAGTATA 421 TTAGTGCTCA TCCTCATATC CTGTTTATGC TCCTCAAAGG ATATGAAGCC CCACAGATTG 481 CCTTACGTTG TGGGATTATG CTGAGAGAAT GTATTCGACA TGAACCACTT GCCAAAATCA 541 TCCTCTTTTC TAATCAATTC AGAGATTTCT TTAAGTACGT GGAGTTGTCA ACATTTGATA 601 TTGCTTCAGA TGCCTTTGCT ACTTTCAAGG ATTTACTAAC CAGACATAAA GTGTTGGTAG 661 CAGACTTCTT AGAACAAAAT TACGACACTA TTTTTGAAGA CTATGAGAAA TTGCTTCAGT 721 CTGAGAATTA TGTTACTAAG AGACAGTCTT TAAAGCTGCT AGGGGAGCTG ATCCTGGACC 781 GTCACAACTT TGCCATCATG ACAAAGTATA TCAGCAAGCC GGAGAACCTG AAACTCATGA 841 TGAACCTCCT TCGGGATAAA AGTCCCAACA TCCAGTTTGA AGCCTTTCAT GTTTTTAAGG 901 TGTTTGTGGC CAGTCCTCAC AAAACACAGC CTATTGTGGA GATCCTGTTA AAAAATCAGC 961 CCAAACTCAT TGAGTTTCTG AGCAGCTTCC AAAAAGAAAG GACGGATGAT GAGCAGTTCG 1021 CTGACGAGAA GAACTACTTG ATTAAACAGA TCCGAGACTT GAAGAAAACG GCCCCTTGCC 1081 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1141 aac