Transcript: Human NM_001287339.1

Homo sapiens calcium binding protein 39 like (CAB39L), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
CAB39L (81617)
Length:
3382
CDS:
189..1202

Additional Resources:

NCBI RefSeq record:
NM_001287339.1
NBCI Gene record:
CAB39L (81617)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001287339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044249 GTGGAGTATATTAGTGCTCAT pLKO.1 534 CDS 100% 4.050 5.670 N CAB39L n/a
2 TRCN0000424890 AGACTTTGGAGGTGCCTATTT pLKO_005 1289 3UTR 100% 13.200 9.240 N CAB39L n/a
3 TRCN0000424621 ATGAACCTCCTTCGGGATAAA pLKO_005 963 CDS 100% 13.200 9.240 N CAB39L n/a
4 TRCN0000432584 TACGTGGAGTTGTCAACATTT pLKO_005 699 CDS 100% 13.200 9.240 N CAB39L n/a
5 TRCN0000044250 GACGAGAAGAACTACTTGATT pLKO.1 1146 CDS 100% 5.625 3.938 N CAB39L n/a
6 TRCN0000044251 CCTTTGCTACTTTCAAGGATT pLKO.1 736 CDS 100% 4.950 3.465 N CAB39L n/a
7 TRCN0000044252 GCTGATAGACTTTGAGGGAAA pLKO.1 449 CDS 100% 4.050 2.835 N CAB39L n/a
8 TRCN0000044248 CAGCCCAAACTCATTGAGTTT pLKO.1 1080 CDS 100% 0.495 0.347 N CAB39L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001287339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09077 pDONR223 100% 99.7% 99.7% None 186A>G;237A>G;278G>A n/a
2 ccsbBroad304_09077 pLX_304 0% 99.7% 99.7% V5 186A>G;237A>G;278G>A n/a
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