Construct: ORF ccsbBroadEn_09092

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013608.1_s300c1, BRDN0000395182
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PITPNM3 (83394)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83394 PITPNM3 PITPNM family member 3 NM_031220.4 99.8% 99.7% 689A>G;806G>A;2430T>C
2 human 83394 PITPNM3 PITPNM family member 3 NM_001165966.2 96.2% 96% (many diffs)
3 human 83394 PITPNM3 PITPNM family member 3 XM_011524015.3 85.2% 85.1% (many diffs)
4 human 83394 PITPNM3 PITPNM family member 3 XM_011524016.3 81.2% 78.2% (many diffs)
5 human 83394 PITPNM3 PITPNM family member 3 XM_011524017.3 55.6% 55.3% (many diffs)
6 mouse 327958 Pitpnm3 PITPNM family member 3 NM_001024927.2 89.4% 94.2% (many diffs)
7 mouse 327958 Pitpnm3 PITPNM family member 3 XM_006533563.1 89.3% 94.1% (many diffs)
8 mouse 327958 Pitpnm3 PITPNM family member 3 NM_001081641.1 88% 93% (many diffs)
9 mouse 327958 Pitpnm3 PITPNM family member 3 XM_006533564.1 87.9% 92.9% (many diffs)
10 mouse 327958 Pitpnm3 PITPNM family member 3 XM_011249083.2 86.5% 89.9% (many diffs)
11 mouse 327958 Pitpnm3 PITPNM family member 3 XM_006533565.2 86.3% 90.7% (many diffs)
12 mouse 327958 Pitpnm3 PITPNM family member 3 XM_006533566.1 85.4% 90.1% (many diffs)
13 mouse 327958 Pitpnm3 PITPNM family member 3 XM_017314612.1 83.6% 88.3% (many diffs)
14 mouse 327958 Pitpnm3 PITPNM family member 3 XR_388480.2 70.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2991
ORF length:
2922
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCAAGGCG GGCCGTGCAG GTGGTCCTCC CCCGGGCGGC GGTGCCCCCT
121GGCACCTTCG AAATGTCCTC AGTGACTCTG TGGAGAGCTC AGATGATGAA TTCTTTGATG
181CCAGAGAGGA GATGGCTGAA GGGAAGAATG CCATCCTCAT TGGGATGAGC CAGTGGAACT
241CCAATGACCT CGTGGAGCAG ATCGAGACCA TGGGGAAACT GGACGAGCAT CAAGGAGAAG
301GGACCGCGCC GTGCACATCC AGCATCCTCC AGGAGAAGCA GCGAGAACTG TACCGGGTTT
361CCTTGAGAAG ACAGAGGTTC CCAGCCCAGG GAAGCATCGA GATCCACGAA GACAGCGAGG
421AAGGCTGCCC GCAGCGCTCC TGCAAGACAC ATGTCCTCCT GCTGGTCCTG CATGGGGGAA
481ACATCCTGGA CACGGGTGCC GGGGACCCGT CCTGCAAGGC AGCCGACATC CACACCTTCA
541GCTCCGTGCT GGAGAAGGTC ACACGAGCCC ATTTCCCTGC TGCCCTGGGC CACATCCTCA
601TCAAGTTCGT CCCCTGTCCT GCCATCTGCT CTGAGGCTTT CTCGCTTGTC TCTCACCTGA
661ACCCCTACAG CCACGATGAG GGCTGCCTCA GCAGCAGCCA GGACCACGTC CCTCTGGCCG
721CCCTTCCCCT GTTGGCCATC TCCTCCCCGC AGTACCGGGA TGCTGTCGCC ACCGTCATCG
781AGCGAGCCAA CCAGGTCTAC AGAGAGTTCC TGAAGTCCTC TGATGGGATT GGCTTCAGTG
841GGCAGGTGTG TCTCATCGGG GACTGTGTGG GGGACCTCCT GGCCTTCGAT GCCATCTGCT
901ACAGTGCGGG GCCCTCAGGG GACAGCCCTG CCAGCAGCAG CCGGAAGGGG AGCATCAGCA
961GCACCCAGGA CACCCCAGTC GCGGTGGAGG AAGATTGCAG CCTGGCCAGC AGCAAGCGTC
1021TCAGCAAAAG CAACATTGAC ATCTCCAGTG GGTTGGAGGA TGAGGAGCCC AAGAGGCCGT
1081TGCCGCGGAA ACAGAGCGAC TCCTCCACCT ATGACTGCGA GGCCATCACC CAGCACCATG
1141CCTTCCTCTC AAGCATCCAC TCCAGCGTGC TAAAGGATGA GTCTGAGACC CCGGCGGCTG
1201GGGGGCCGCA GCTCCCTGAG GTCAGCCTGG GCCGCTTTGA CTTCGATGTG TCCGACTTCT
1261TCCTCTTCGG CTCGCCACTG GGCCTGGTCC TGGCCATGCG GAGGACGGTG CTGCCTGGGC
1321TGGACGGCTT CCAGGTGCGT CCTGCCTGCA GCCAGGTCTA CAGCTTCTTC CATTGCGCAG
1381ACCCCTCTGC CTCACGGCTC GAGCCACTGC TGGAGCCCAA GTTCCACCTG GTGCCGCCTG
1441TCAGCGTGCC TCGCTACCAG AGGTTCCCAC TGGGCGATGG GCAGTCCCTC CTCCTCGCTG
1501ATGCCCTACA CACCCACAGC CCCCTCTTCC TGGAGGGCAG CTCCCGGGAC AGCCCGCCAC
1561TTCTGGATGC CCCTGCCTCG CCCCCTCAGG CCTCGAGGTT CCAGCGCCCA GGACGGAGGA
1621TGAGCGAGGG GAGCTCCCAC AGCGAGAGCT CGGAGTCCTC GGACAGCATG GCACCCGTGG
1681GTGCCTCCCG CATCACAGCC AAGTGGTGGG GAAGCAAGAG GATCGACTAT GCCCTGTACT
1741GCCCTGATGT CCTCACGGCC TTCCCCACCG TGGCCCTGCC CCACCTCTTC CACGCCAGTT
1801ACTGGGAGTC CACAGACGTG GTGGCCTTCA TCCTGAGACA GGTAATGCGC TATGAGAGCG
1861TGAACATCAA GGAAAGCGCC CGCCTGGACC CTGCAGCACT GAGTCCTGCC AACCCCCGGG
1921AGAAGTGGCT TCGTAAGCGG ACTCAGGTCA AGCTGAGGAA TGTCACGGCT AATCACCGGG
1981CCAATGATGT GATTGCTGCT GAAGATGGCC CCCAGGTCCT GGTGGGGCGG TTCATGTACG
2041GGCCCCTCGA CATGGTGGCT CTGACTGGAG AGAAGGTGGA CATCCTAGTA ATGGCAGAGC
2101CATCCTCAGG CCGCTGGGTA CACCTGGACA CAGAGATCAC CAACAGCAGT GGTCGCATCA
2161CATACAATGT GCCGCGGCCC CGGCGCCTGG GGGTTGGTGT CTATCCTGTG AAGATGGTCG
2221TCAGGGGCGA CCAGACCTGT GCCATGAGCT ACCTCACGGT GTTGCCCAGG GGCATGGAGT
2281GTGTAGTGTT CAGCATTGAT GGGTCCTTCG CGGCCAGCGT GTCTATCATG GGAAGCGACC
2341CCAAGGTCCG GCCGGGTGCA GTGGATGTTG TCCGGCACTG GCAGGACTTG GGCTACATGA
2401TCCTTTACAT CACGGGACGG CCGGACATGC AGAAGCAGCG GGTGGTGTCG TGGCTGTCCC
2461AGCACAACTT CCCACAGGGC ATGATCTTCT TCTCCGACGG GCTGGTGCAT GACCCGCTGC
2521GGCAGAAGGC CATCTTCCTG CGCAACCTCA TGCAGGAGTG CTTCATCAAA ATCAGTGCGG
2581CCTATGGCTC CACGAAGGAC ATCTCTGTCT ACAGCGTGCT GGGCCTGCCT GCCTCCCAGA
2641TCTTCATTGT GGGCCGGCCC ACCAAGAAGT ACCAAACCCA GTGCCAGTTC CTGAGCGAGG
2701GCTACGCCGC ACACCTGGCC GCGCTGGAGG CCAGCCACCG CTCACGCCCA AAGAAGAACA
2761ACTCGCGCAT GATCCTGCGC AAGGGCAGCT TCGGGCTGCA CGCGCAGCCA GAGTTCCTGC
2821GGAAGCGCAA CCACCTGCGC AGAACCATGT CAGTGCAGCA GCCCGACCCG CCCGCCGCCA
2881ACCCCAAGCC CGAGCGGGCC CAGAGCCAGC CCGAGTCGGA CAAAGACCAC GAGCGGCCGC
2941TGCCGGCGCT CAGCTGGGCG CGTGGGCCCC CCAAGTTCGA GTCGGTGCCC TTGCCAACTT
3001TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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