Construct: ORF ccsbBroadEn_09098
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011388.1_s300c1, BRDN0000389650
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KATNAL2 (83473)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_031303.3 | 99.9% | 99.7% | 263G>A |
2 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_017026030.2 | 99.7% | 99.5% | 70_71insCAG;260G>A |
3 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353903.1 | 91.5% | 91.4% | 0_1ins117;146G>A |
4 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_005258361.3 | 91.5% | 91.4% | 0_1ins117;146G>A |
5 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_017026031.1 | 91.5% | 91.4% | 0_1ins117;146G>A |
6 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001367621.1 | 86.5% | 86.4% | 1_216del;479G>A |
7 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_006722554.4 | 86.5% | 86.4% | 1_216del;479G>A |
8 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353904.1 | 84.4% | 84.3% | 0_1ins117;146G>A;391_392ins99 |
9 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353899.1 | 82.5% | 82.4% | 1_294del;557G>A |
10 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353900.1 | 82.3% | 82.2% | 1_294del;364_365insCAG;554G>A |
11 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_017026028.2 | 71% | 68.2% | (many diffs) |
12 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353905.1 | 69.5% | 65% | (many diffs) |
13 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353906.1 | 69.5% | 65% | (many diffs) |
14 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353907.1 | 69.2% | 65.9% | (many diffs) |
15 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353901.1 | 67.5% | 63.6% | (many diffs) |
16 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_011526219.3 | 66.3% | 56.2% | (many diffs) |
17 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_011526220.2 | 64.5% | 60.7% | (many diffs) |
18 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_011526221.3 | 63.9% | 60.3% | (many diffs) |
19 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353908.1 | 62.7% | 58.1% | (many diffs) |
20 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XM_011526223.3 | 61.1% | 59.1% | (many diffs) |
21 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353902.1 | 58.9% | 54.9% | (many diffs) |
22 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NM_001353909.1 | 58.5% | 56.1% | (many diffs) |
23 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | NR_148563.1 | 32.9% | (many diffs) | |
24 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XR_001753286.2 | 21.4% | (many diffs) | |
25 | human | 83473 | KATNAL2 | katanin catalytic subunit A... | XR_002958187.1 | 18.9% | (many diffs) | |
26 | mouse | 71206 | Katnal2 | katanin p60 subunit A-like 2 | XM_011247073.1 | 75.4% | 77.1% | (many diffs) |
27 | mouse | 71206 | Katnal2 | katanin p60 subunit A-like 2 | XM_006526438.3 | 72.9% | 74.7% | (many diffs) |
28 | mouse | 71206 | Katnal2 | katanin p60 subunit A-like 2 | XM_006526437.3 | 72.8% | 74.4% | (many diffs) |
29 | mouse | 71206 | Katnal2 | katanin p60 subunit A-like 2 | NM_027721.2 | 52.6% | 53.5% | (many diffs) |
30 | mouse | 71206 | Katnal2 | katanin p60 subunit A-like 2 | XR_001782393.1 | 39.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1464
- ORF length:
- 1398
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ATATGAGAGT TATTATTTTG TAAAATTTCA GAAATACCCC AAAATTGTCA 121 AAAAGTCATC AGACACAGCA GAAAATAATT TACCGCAAAG AAGTAGAGGG AAGACCAGAA 181 GGATGATGAA CGACAGTTGT CAAAATCTTC CCAAGATCAA TCAGCAGAGG CCCCGGTCCA 241 AAACCACAGC GGGGAAGACA GGGGACACCA AATCGCTCAA TAAGGAGCAT CCTAATCAGG 301 AGGTAGTTGA TAACACTCGC CTGGAAAATG CCAACTTCGG CCTACATATA TCAAGAATCC 361 GTAAAGACAG TGGAGAGGAA AATGCCCACC CACGAAGAGG CCAAATCATT GACTTCCAAG 421 GGCTGCTCAC AGATGCCATC AAGGGAGCAA CCAGTGAACT TGCCTTGAAC ACCTTCGACC 481 ATAATCCAGA CCCCTCAGAA CGACTGCTGA AACCTCTGAG TGCATTTATT GGCATGAACA 541 GTGAGATGCG AGAATTGGCA GCCGTGGTGA GCCGGGACAT TTATCTCCAT AATCCAAACA 601 TAAAGTGGAA TGACATTATT GGACTTGATG CAGCCAAGCA GTTAGTCAAA GAAGCTGTTG 661 TGTATCCTAT AAGGTATCCA CAGCTATTTA CAGGAATTCT TTCTCCCTGG AAAGGACTAC 721 TGCTGTACGG CCCTCCAGGT ACAGGAAAGA CTTTACTGGC CAAAGCTGTG GCCACTGAAT 781 GTAAAACAAC CTTCTTTAAC ATTTCTGCAT CCACCATTGT CAGCAAATGG AGAGGGGATT 841 CAGAAAAACT CGTTCGGGTG TTATTTGAGC TTGCCCGCTA CCACGCCCCA TCCACGATCT 901 TCCTGGACGA GCTGGAGTCG GTGATGAGTC AGAGAGGCAC AGCTTCTGGG GGAGAACATG 961 AAGGAAGCCT GCGGATGAAG ACAGAGTTAC TGGTGCAGAT GGATGGGCTG GCACGCTCAG 1021 AAGATCTCGT ATTTGTCTTA GCAGCTTCTA ACCTGCCGTG GGAGCTGGAC TGTGCCATGT 1081 TACGCCGCCT GGAGAAGAGG ATTCTGGTCG ATCTCCCCAG CCGGGAGGCC AGGCAGGCCA 1141 TGATCTACCA CTGGCTGCCT CCTGTGAGCA AGAGCAGGGC CTTGGAGCTG CACACAGAGC 1201 TGGAGTACAG TGTGCTGAGC CAGGAGACTG AGGGCTACTC AGGCTCAGAT ATTAAGCTCG 1261 TCTGCAGGGA AGCAGCCATG CGGCCCGTGA GGAAGATCTT TGATGCACTT GAAAATCACC 1321 AGTCAGAAAG CAGCGACTTA CCCAGGATCC AGTTGGATAT AGTAACCACT GCCGACTTTC 1381 TGGATGTGCT AACTCACACC AAGCCCTCCG CAAAGAATCT GGCTCAGAGA TACTCAGACT 1441 GGCAAAGAGA GTTCGAGTCT GTCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac