Construct: ORF ccsbBroadEn_09103
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002824.1_s300c1, BRDN0000394263
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM167A (83648)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83648 | FAM167A | family with sequence simila... | NM_053279.3 | 99.8% | 99.5% | 168T>G |
| 2 | human | 83648 | FAM167A | family with sequence simila... | XM_005272398.5 | 99.8% | 99.5% | 168T>G |
| 3 | human | 83648 | FAM167A | family with sequence simila... | XM_011543837.1 | 99.8% | 99.5% | 168T>G |
| 4 | human | 83648 | FAM167A | family with sequence simila... | XM_011543838.3 | 99.8% | 99.5% | 168T>G |
| 5 | human | 83648 | FAM167A | family with sequence simila... | XM_011543840.3 | 99.8% | 99.5% | 168T>G |
| 6 | human | 83648 | FAM167A | family with sequence simila... | XM_024447292.1 | 99.8% | 99.5% | 168T>G |
| 7 | mouse | 219148 | Fam167a | family with sequence simila... | NM_177628.4 | 82.4% | 83.2% | (many diffs) |
| 8 | mouse | 219148 | Fam167a | family with sequence simila... | XM_006518877.3 | 82.4% | 83.2% | (many diffs) |
| 9 | mouse | 219148 | Fam167a | family with sequence simila... | XM_006518878.3 | 82.4% | 83.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 711
- ORF length:
- 642
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTGTGCCC CAGATCCACG TGGAAGAAGT GGGTGCAGAA GAGGGGGCGG 121 GAGCAGCCGC ACCACCCGAT GACCACCTCC GGAGCCTGAA GGCCCTCACC GAGAAACTGA 181 GGCTGGAGAC CCGCAGGCCC TCCTACCTGG AATGGCAGGC CAGGCTGGAG GAGCAGACCT 241 GGCCCTTCCC GAGGCCGGCT GCGGAGCCAC AGGCGAGCTT GGAGGAGGGG GAGCGTGGGG 301 GGCAGGAGCC CTTGCTCCCC CTGAGAGAGG CTGGGCAGCA CCCCCCTTCT GCCAGGAGTG 361 CCAGCCAAGG TGCCAGACCC CTGTCCACTG GCAAGCTGGA AGGCTTTCAG AGCATCGATG 421 AAGCTATAGC CTGGCTCAGG AAGGAACTGA CGGAGATGCG GCTGCAGGAC CAGCAACTGG 481 CCAGACAGCT CATGCGCCTG CGTGGCGACA TCAACAAGCT GAAAATCGAA CACACCTGCC 541 GCCTCCACAG GAGGATGCTC AACGATGCCA CCTACGAGCT GGAGGAGCGG GATGAGCTGG 601 CCGACCTCTT CTGTGACTCC CCTCTTGCCT CCTCCTTCAG CCTCTCCACA CCACTCAAGC 661 TTATTGGCGT GACCAAGATG AACATCAACT CTCGGAGGTT CTCTCTCTGC TTGCCAACTT 721 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac