Construct: ORF ccsbBroadEn_09188

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014598.1_s300c1, BRDN0000456738
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB11FIP4 (84440)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84440 RAB11FIP4 RAB11 family interacting pr... NM_032932.6 99.9% 100% 1770G>A
2 human 84440 RAB11FIP4 RAB11 family interacting pr... NM_001303542.3 83.1% 82.7% (many diffs)
3 human 84440 RAB11FIP4 RAB11 family interacting pr... NM_001346748.2 77.8% 77.8% 0_1ins423;1347G>A
4 human 84440 RAB11FIP4 RAB11 family interacting pr... NM_001346747.2 72.9% 72.3% (many diffs)
5 human 84440 RAB11FIP4 RAB11 family interacting pr... NM_001346749.2 59.1% 59.1% 0_1ins780;990G>A
6 mouse 268451 Rab11fip4 RAB11 family interacting pr... NM_175543.3 87.6% 92.6% (many diffs)
7 mouse 268451 Rab11fip4 RAB11 family interacting pr... XM_006533403.1 84.7% 89.4% (many diffs)
8 mouse 268451 Rab11fip4 RAB11 family interacting pr... XM_006533404.3 72.6% 76.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1980
ORF length:
1911
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGGCGGC GCGGGCTGGT CGGGCGCCCC CGCGGCTCTG CTGCGCTCCG
121TGCGCCGCCT GCGCGAGGTG TTCGAGGTGT GCGGCCGCGA CCCCGACGGC TTCCTGCGCG
181TGGAGCGCGT CGCGGCGCTC GGACTGCGCT TCGGCCAGGG CGAGGAGGTG GAAAAACTTG
241TGAAATATTT GGATCCCAAC GACCTGGGGA GAATCAACTT CAAGGACTTT TGCCGGGGGG
301TGTTCGCCAT GAAAGGGTGC GAGGAGCTGC TGAAGGATGT GCTGTCGGTG GAGAGCGCGG
361GGACGCTGCC GTGCGCGCCA GAGATCCCAG ACTGCGTGGA GCAGGGCAGC GAGGTCACAG
421GCCCCACCTT TGCTGATGGC GAGCTCATCC CCAGGGAACC CGGCTTTTTT CCCGAGGACG
481AGGAGGAGGC TATGACGCTG GCGCCACCTG AGGGCCCCCA GGAGTTGTAC ACAGACAGCC
541CCATGGAGAG CACTCAGAGC CTGGAGGGGT CTGTCGGGAG TCCTGCCGAG AAGGACGGGG
601GACTTGGGGG CCTGTTTCTG CCAGAAGACA AGTCCCTGGT CCACACTCCA TCCATGACGA
661CCTCAGACCT TTCTACACAC TCCACCACCT CGCTCATCAG CAATGAGGAG CAGTTTGAAG
721ACTATGGGGA GGGTGACGAT GTGGACTGTG CCCCCAGCAG CCCTTGCCCC GATGATGAGA
781CCAGGACCAA CGTCTACTCG GACCTGGGGT CTTCGGTGTC TTCCAGTGCG GGGCAGACGC
841CTAGGAAAAT GCGGCACGTG TACAACAGCG AATTGCTAGA TGTTTACTGC TCTCAATGCT
901GCAAGAAAAT CAACCTGCTC AATGACTTGG AAGCCCGACT GAAAAACCTG AAGGCCAACA
961GCCCCAACCG AAAGATCTCC AGCACGGCCT TTGGACGGCA GCTCATGCAC AGCAGCAACT
1021TCAGCAGCAG CAATGGCAGC ACCGAAGACC TGTTCCGGGA CAGCATTGAC TCTTGCGACA
1081ATGACATCAC AGAGAAGGTA AGCTTCCTGG AAAAGAAGGT GACAGAGCTG GAGAATGACA
1141GCCTGACCAA TGGGGACCTG AAGAGCAAGC TGAAGCAAGA GAACACACAG CTGGTGCACA
1201GGGTGCATGA GCTGGAGGAG ATGGTGAAGG ATCAGGAGAC CACGGCCGAG CAGGCTCTGG
1261AGGAGGAGGC GCGGCGCCAC CGCGAGGCCT ACGGCAAGCT GGAGAGGGAG AAGGCTACCG
1321AGGTGGAGCT GCTCAATGCC AGGGTGCAGC AGTTGGAGGA AGAAAATACA GAGCTTAGAA
1381CAACAGTGAC TCGGCTCAAG TCTCAAACAG AGAAACTGGA TGAGGAGCGG CAGCGCATGT
1441CTGACCGTCT GGAGGACACC AGCCTGCGGC TCAAAGATGA GATGGACCTG TACAAGCGCA
1501TGATGGACAA GCTGCGACAG AACCGCCTTG AGTTCCAGAA GGAGCGGGAG GCGACGCAGG
1561AGCTCATCGA GGACTTGCGG AAGGAGCTGG AGCACCTGCA GATGTACAAG CTGGACTGCG
1621AGCGGCCAGG CAGGGGCCGC AGTGCCTCCT CTGGCCTAGG CGAGTTCAAT GCCAGGGCCC
1681GCGAGGTGGA GCTCGAGCAC GAGGTCAAGC GGCTCAAGCA GGAGAATTAT AAGCTGCGGG
1741ATCAGAACGA CGACTTGAAT GGGCAGATTT TGAGCCTCAG CCTCTACGAA GCAAAAAACC
1801TCTTTGCTGC CCAGACTAAA GCCCAGTCTC TGGCTGCAGA GATAGACACC GCCTCGCGCG
1861ATGAGCTAAT GGAAGCCCTG AAGGAGCAGG AGGAGATCAA CTTCCGGCTG AGGCAGTACA
1921TGGACAAGAT TATCCTCGCC ATCCTGGACC ACAATCCCTC CATCCTCGAG ATCAAACACT
1981TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca
2041acgaac

Download FASTA (ORF) (Full)

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