Construct: ORF ccsbBroadEn_09203
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017313.1_s300c1, BRDN0000385590
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LYZL1 (84569)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84569 | LYZL1 | lysozyme like 1 | XM_005252627.3 | 90.5% | 87.2% | (many diffs) |
| 2 | human | 84569 | LYZL1 | lysozyme like 1 | XM_017016791.1 | 82.3% | 70.7% | (many diffs) |
| 3 | human | 119180 | LYZL2 | lysozyme like 2 | XM_011519307.2 | 80.1% | 74.3% | (many diffs) |
| 4 | human | 119180 | LYZL2 | lysozyme like 2 | XM_011519306.2 | 79.2% | 74.7% | (many diffs) |
| 5 | human | 84569 | LYZL1 | lysozyme like 1 | NM_032517.6 | 76.1% | 75.7% | 0_1ins138;185A>C |
| 6 | human | 119180 | LYZL2 | lysozyme like 2 | NM_183058.3 | 74.3% | 73.7% | (many diffs) |
| 7 | human | 119180 | LYZL2 | lysozyme like 2 | XR_930469.2 | 73% | (many diffs) | |
| 8 | human | 84569 | LYZL1 | lysozyme like 1 | XR_428650.1 | 60.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 648
- ORF length:
- 582
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GGACGCTCCC CTGAGCTGCC TGTCACCGAC TAGGTGGAGC AGTGTTTCTT 121 CCGCAGACTC AACTGAGAAG TCAGCCTCTG GGGCAGGCAC CAGGAATCTG CCTTTTCAGT 181 TCTGTCTCCG GCAGGCTTTG AGGATGAAGG CTGCGGGCAT TCTGACCCTC ATTGGCTGCC 241 TGGTCACAGG CGCCGAGTCC AAAATCTACA CTCGTTGCAA ACTGGCAAAA ATATTCTCGA 301 GGGCTGGCCT GGACAATTAC TGGGGCTTCA GCCTTGGAAA CTGGATCTGC ATGGCATATT 361 ATGAGAGCGG CTACAACACC ACAGCCCCGA CGGTCCTGGA TGACGGCAGC ATCGACTATG 421 GCATCTTCCA GATCAACAGC TTCGCGTGGT GCAGACGCGG AAAGCTGAAG GAGAACAACC 481 ACTGCCATGT CGCCTGCTCA GCCTTGATCA CTGATGACCT CACAGATGCA ATTATCTGTG 541 CCAGGAAAAT TGTTAAAGAG ACACAAGGAA TGAACTATTG GCAAGGCTGG AAGAAACATT 601 GTGAGGGCAG AGACCTGTCC GAGTGGAAAA AAGGCTGTGA GGTTTCCTAC CCAACTTTCT 661 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac