Construct: ORF ccsbBroadEn_09273

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001641.1_s300c1, BRDN0000457041
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIGLEC10 (89790)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 89790 SIGLEC10 sialic acid binding Ig like... NM_033130.5 99.9% 99.8% 144G>A;677C>T
2 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001171156.2 91.5% 91.5% 144G>A;418_419ins174;503C>T
3 human 89790 SIGLEC10 sialic acid binding Ig like... XM_005259366.5 86.9% 86.8% 144G>A;677C>T;754_755ins270
4 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001171157.2 86.2% 86.2% 144G>A;677C>T;1330_1331ins285
5 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001171158.2 79.3% 79.3% (many diffs)
6 human 89790 SIGLEC10 sialic acid binding Ig like... XM_005259367.4 78.6% 78.4% (many diffs)
7 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001171159.2 77.9% 77.9% (many diffs)
8 human 114132 SIGLEC11 sialic acid binding Ig like... NM_052884.3 76.4% 65.8% (many diffs)
9 human 114132 SIGLEC11 sialic acid binding Ig like... XM_005258476.3 74.4% 64.1% (many diffs)
10 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001322105.2 73.3% 73.1% (many diffs)
11 human 114132 SIGLEC11 sialic acid binding Ig like... NM_001135163.1 67.8% 54.9% (many diffs)
12 human 89790 SIGLEC10 sialic acid binding Ig like... NM_001171161.2 65% 64.8% (many diffs)
13 human 400709 SIGLEC16 sialic acid binding Ig like... NM_001348364.2 59% 50.4% (many diffs)
14 human 114132 SIGLEC11 sialic acid binding Ig like... XM_005258477.3 55.6% 50.5% (many diffs)
15 human 114132 SIGLEC11 sialic acid binding Ig like... XR_243888.4 55.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2160
ORF length:
2091
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTACTGCCA CTGCTGCTGT CCTCGCTGCT GGGCGGGTCC CAGGCTATGG
121ATGGGAGATT CTGGATACGA GTGCAGGAGT CAGTGATGGT GCCGGAGGGC CTGTGCATCT
181CTGTGCCCTG CTCTTTCTCC TACCCCCGAC AAGACTGGAC AGGGTCTACC CCAGCTTATG
241GCTACTGGTT CAAAGCAGTG ACTGAGACAA CCAAGGGTGC TCCTGTGGCC ACAAACCACC
301AGAGTCGAGA GGTGGAAATG AGCACCCGGG GCCGATTCCA GCTCACTGGG GATCCCGCCA
361AGGGGAACTG CTCCTTGGTG ATCAGAGACG CGCAGATGCA GGATGAGTCA CAGTACTTCT
421TTCGGGTGGA GAGAGGAAGC TATGTGAGAT ATAATTTCAT GAACGATGGG TTCTTTCTAA
481AAGTAACAGC CCTGACTCAG AAGCCTGATG TCTACATCCC CGAGACCCTG GAGCCCGGGC
541AGCCGGTGAC GGTCATCTGT GTGTTTAACT GGGCCTTTGA GGAATGTCCA CCCCCTTCTT
601TCTCCTGGAC GGGGGCTGCC CTCTCCTCCC AAGGAACCAA ACCAACGACC TCCCACTTCT
661CAGTGCTCAG CTTCACGCCC AGACCCCAGG ACCACAACAC CGACCTCACC TGCCATGTGG
721ACTTCTCCAG AAAGGGTGTG AGCGTACAGA GGACCGTCCG ACTCCGTGTG GCCTATGCCC
781CCAGAGACCT TGTTATCAGC ATTTCACGTG ACAACACGCC AGCCCTGGAG CCCCAGCCCC
841AGGGAAATGT CCCATACCTG GAAGCCCAAA AAGGCCAGTT CCTGCGGCTC CTCTGTGCTG
901CTGACAGCCA GCCCCCTGCC ACACTGAGCT GGGTCCTGCA GAACAGAGTC CTCTCCTCGT
961CCCATCCCTG GGGCCCTAGA CCCCTGGGGC TGGAGCTGCC CGGGGTGAAG GCTGGGGATT
1021CAGGGCGCTA CACCTGCCGA GCGGAGAACA GGCTTGGCTC CCAGCAGCGA GCCCTGGACC
1081TCTCTGTGCA GTATCCTCCA GAGAACCTGA GAGTGATGGT TTCCCAAGCA AACAGGACAG
1141TCCTGGAAAA CCTTGGGAAC GGCACGTCTC TCCCAGTACT GGAGGGCCAA AGCCTGTGCC
1201TGGTCTGTGT CACACACAGC AGCCCCCCAG CCAGGCTGAG CTGGACCCAG AGGGGACAGG
1261TTCTGAGCCC CTCCCAGCCC TCAGACCCCG GGGTCCTGGA GCTGCCTCGG GTTCAAGTGG
1321AGCACGAAGG AGAGTTCACC TGCCACGCTC GGCACCCACT GGGCTCCCAG CACGTCTCTC
1381TCAGCCTCTC CGTGCACTAC TCCCCGAAGC TGCTGGGCCC CTCCTGCTCC TGGGAGGCTG
1441AGGGTCTGCA CTGCAGCTGC TCCTCCCAGG CCAGCCCGGC CCCCTCTCTG CGCTGGTGGC
1501TTGGGGAGGA GCTGCTGGAG GGGAACAGCA GCCAGGACTC CTTCGAGGTC ACCCCCAGCT
1561CAGCCGGGCC CTGGGCCAAC AGCTCCCTGA GCCTCCATGG AGGGCTCAGC TCCGGCCTCA
1621GGCTCCGCTG TGAGGCCTGG AACGTCCATG GGGCCCAGAG TGGATCCATC CTGCAGCTGC
1681CAGATAAGAA GGGACTCATC TCAACGGCAT TCTCCAACGG AGCGTTTCTG GGAATCGGCA
1741TCACGGCTCT TCTTTTCCTC TGCCTGGCCC TGATCATCAT GAAGATTCTA CCGAAGAGAC
1801GGACTCAGAC AGAAACCCCG AGGCCCAGGT TCTCCCGGCA CAGCACGATC CTGGATTACA
1861TCAATGTGGT CCCGACGGCT GGCCCCCTGG CTCAGAAGCG GAATCAGAAA GCCACACCAA
1921ACAGTCCTCG GACCCCTCTT CCACCAGGTG CTCCCTCCCC AGAATCAAAG AAGAACCAGA
1981AAAAGCAGTA TCAGTTGCCC AGTTTCCCAG AACCCAAATC ATCCACTCAA GCCCCAGAAT
2041CCCAGGAGAG CCAAGAGGAG CTCCATTATG CCACGCTCAA CTTCCCAGGC GTCAGACCCA
2101GGCCTGAGGC CCGGATGCCC AAGGGCACCC AGGCGGATTA TGCAGAAGTC AAGTTCCAAT
2161TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca
2221acgaac

Download FASTA (ORF) (Full)