Transcript: Human NM_001135163.1

Homo sapiens sialic acid binding Ig like lectin 11 (SIGLEC11), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
SIGLEC11 (114132)
Length:
2895
CDS:
92..1900

Additional Resources:

NCBI RefSeq record:
NM_001135163.1
NBCI Gene record:
SIGLEC11 (114132)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001135163.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222049 CCCATTCAAATGGAGCACGAA pLKO.1 1364 CDS 100% 2.640 2.112 N SIGLEC11 n/a
2 TRCN0000222050 AGACATAGTTTCCTGAGCAAT pLKO.1 509 CDS 100% 4.950 3.465 N SIGLEC11 n/a
3 TRCN0000222051 GCTTCAATTGGAGAGGGAGAT pLKO.1 1858 CDS 100% 4.050 2.835 N SIGLEC11 n/a
4 TRCN0000222052 TGTCGTCTTCAGGGTGAAGAT pLKO.1 1540 CDS 100% 0.495 0.347 N SIGLEC11 n/a
5 TRCN0000222053 GCTCGCTTTCTGTTCCTGCCT pLKO.1 1519 CDS 100% 0.220 0.154 N SIGLEC11 n/a
6 TRCN0000157078 GTGACGGTCATCTGTGTGTTT pLKO.1 608 CDS 100% 4.950 2.475 Y SIGLEC10 n/a
7 TRCN0000158034 CTGAGAGTGATGGTTTCCCAA pLKO.1 1163 CDS 100% 2.640 1.320 Y SIGLEC10 n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2268 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2268 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001135163.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09273 pDONR223 100% 67.8% 54.9% None (many diffs) n/a
2 ccsbBroad304_09273 pLX_304 0% 67.8% 54.9% V5 (many diffs) n/a
3 TRCN0000481318 CTTGAACAGTGTGCCTTCGGTTGG pLX_317 19.4% 67.8% 54.9% V5 (many diffs) n/a
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