Construct: ORF ccsbBroadEn_09344
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007187.1_s300c1, BRDN0000389514
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF764 (92595)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92595 | ZNF764 | zinc finger protein 764 | NM_033410.4 | 99.9% | 99.7% | 995C>T |
| 2 | human | 92595 | ZNF764 | zinc finger protein 764 | NM_001172679.2 | 99.6% | 99.5% | 307_308insCAG;992C>T |
| 3 | human | 65988 | ZNF747 | zinc finger protein 747 | NM_001305018.1 | 69.4% | 66.1% | (many diffs) |
| 4 | human | 65988 | ZNF747 | zinc finger protein 747 | NM_001305019.1 | 69.1% | 65.8% | (many diffs) |
| 5 | human | 65988 | ZNF747 | zinc finger protein 747 | NM_023931.3 | 26.9% | 20.3% | (many diffs) |
| 6 | human | 65988 | ZNF747 | zinc finger protein 747 | NM_001305020.1 | 26.7% | 20.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1290
- ORF length:
- 1224
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCCGCCTCTG GCCCCGCTCC CTCCCCGGGA CCCAAACGGG GCCGGACCCG 121 AGTGGAGGGA GCCGGGGGCT GTGAGCTTCG CGGACGTGGC CGTGTACTTC TGCCGGGAGG 181 AGTGGGGCTG CTTGCGGCCA GCGCAGAGGG CCCTGTACCG GGACGTGATG CGGGAGACCT 241 ACGGCCACCT GAGCGCTCTC GGAATCGGAG GCAACAAGCC AGCTCTCATC TCCTGGGTGG 301 AGGAGGAGGC CGAACTGTGG GGTCCGGCTG CCCAGGATCC GGAGGTGGCG AAATGTCAGA 361 CACAAACGGA CCCAGCAGAT TCCAGAAACA AGAAAAAGGA AAGACAAAGG GAAGGGACGG 421 GAGCCCTGGA GAAGCCCGAC CCTGTGGCCG CCGGGTCTCC TGGGCTGAAG TCTCCCCAAG 481 CCCCCTCGGC CGGGCCCCCT TATGGTTGGG AGCAGCTGTC CAAGGCACCG CACCGGGGAC 541 GCCCCTCCCT CTGTGCCCAC CCCCCTGTCC CCCGAGCTGA CCAGCGTCAT GGCTGCTACG 601 TGTGCGGGAA GAGCTTTGCC TGGCGCTCCA CACTGGTGGA GCACGTCTAC AGTCACACTG 661 GCGAGAAGCC CTTCCACTGC ACTGACTGCG GCAAGGGCTT CGGCCACGCT TCCTCCCTGA 721 GCAAACACCG GGCCATCCAT CGTGGGGAGC GGCCCCACCG CTGTCTGGAG TGTGGCCGGG 781 CCTTCACGCA GCGCTCGGCG CTGACTTCGC ACCTGCGCGT CCACACCGGC GAGAAACCCT 841 ATGGCTGCGC CGACTGTGGC CGCCGCTTCA GCCAGAGCTC TGCCCTCTAC CAGCACCGGC 901 GCGTGCACAG CGGCGAGACC CCCTTCCCCT GCCCGGACTG TGGCCGCGCC TTCGCCTACC 961 CCTCGGACCT GCGGCGCCAC GTGCGCACCC ACACCGGCGA GAAGCCCTAC CCGTGCCCGG 1021 ACTGCGGGCG CTGCTTCCGC CAGAGCTCGG AGATGGCAGT CCACAGGCGC ACCCACAGCG 1081 GCGAGAAGCC CTACCCCTGC CCGCAGTGCG GCCGCCGCTT TGGCCAGAAG TCAGCCGTGG 1141 CCAAACACCA GTGGGTTCAT CGGCCCGGGG CCGGGGGCCA CAGGGGCCGG GTCGCCGGGC 1201 GTCTGTCTGT GACCCTGACC CCTGGCCACG GAGACCTGGA CCCGCCCGTG GGCTTCCAGC 1261 TGTACCCGGA GATATTCCAG GAGTGTGGGT GCCCAACTTT CTTGTACAAA GTtggcatta 1321 taagaaagca ttgcttatca atttgttgca acgaac