Construct: ORF ccsbBroadEn_09351
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012633.1_s300c1, BRDN0000394769
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF276 (92822)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92822 | ZNF276 | zinc finger protein 276 | NM_152287.4 | 99.8% | 99.6% | 562T>C;1075T>C |
| 2 | human | 92822 | ZNF276 | zinc finger protein 276 | NM_001113525.2 | 87.6% | 87.4% | 1_225del;787T>C;1300T>C |
| 3 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_005256324.3 | 84.9% | 61.3% | (many diffs) |
| 4 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_005256328.3 | 74% | 52.4% | (many diffs) |
| 5 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_017023890.1 | 74% | 52.4% | (many diffs) |
| 6 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_243507.2 | 70.4% | (many diffs) | |
| 7 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_429740.2 | 68.6% | (many diffs) | |
| 8 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752031.1 | 67.8% | (many diffs) | |
| 9 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752032.1 | 64.5% | (many diffs) | |
| 10 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_002957853.1 | 57.6% | (many diffs) | |
| 11 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752029.1 | 54.7% | (many diffs) | |
| 12 | human | 92822 | ZNF276 | zinc finger protein 276 | XM_017023889.1 | 52.4% | 51.3% | (many diffs) |
| 13 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_001752030.1 | 46.2% | (many diffs) | |
| 14 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110128.1 | 44.8% | (many diffs) | |
| 15 | human | 92822 | ZNF276 | zinc finger protein 276 | XR_933484.2 | 44.7% | (many diffs) | |
| 16 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110122.2 | 34.5% | (many diffs) | |
| 17 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110126.2 | 34.4% | (many diffs) | |
| 18 | human | 92822 | ZNF276 | zinc finger protein 276 | NR_110129.2 | 34.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1686
- ORF length:
- 1617
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGTCACTGT CGCCTCTGCC ACGGGAAGTT TTCCTCGAGA AGCCTGCGCA 121 GCATCTCCGA GAGGGCGCCT GGAGCGAGCA TGGAGAGGCC ATCCGCAGAG GAGCGCGTGC 181 TCGTACGGGA CTTCCAGCGC CTGCTTGGTG TGGCTGTCCG CCAGGACCCC ACCTTGTCTC 241 CGTTTGTCTG CAAGAGCTGC CACGCCCAGT TCTACCAGTG CCACAGCCTT CTCAAGTCCT 301 TCCTGCAGAG GGTCAACGCC TCCCCGGCTG GTCGCCGGAA GCCTTGTGCA AAGGTCGGTG 361 CCCAGCCCCC AACAGGGGCA GAGGAGGGAG CGTGTCTGGT GGATCTGATC ACATCCAGCC 421 CCCAGTGCCT GCACGGCTTG GTGGGGTGGG TGCATGGACA TGCGGCCAGC TGCGGGGCCC 481 TGCCCCACCT TCAGAGGACA CTGTCCTCCG AGTACTGCGG CGTCATCCAG GTCGTGTGGG 541 GCTGCGACCA GGGCCACGAC TACACCATGG ATACCAGCTC CAGCTGCAAG GCCTTCTTGC 601 TGGACAGTGC GCTGGCAGTC AAGTGGCCAC GGGACAAAGA GACGGCGCCA CGGCTGCCCC 661 AGCACCGAGG GTGGAACCCT GGGGATGCCC CTCAGACCTC CCAGGGTAGA GGGACAGGGA 721 CCCCAGTTGG GGCTGAGACC AAGACCCTGC CCAGCACGGA TGTGGCCCAG CCTCCTTCGG 781 ACAGCGACGC GGTGGGGCCC AGGTCGGGCT TCCCACCTCA GCCAAGCCTG CCCCTTTGCA 841 GGGCCCCAGG GCAGTTGGGT GAGAAGCAGC TTCCATCTTC AACCTCGGAT GATCGGGTAA 901 AAGACGAGTT CAGTGACCTT TCTGAGGGAG ACGTCTTGAG TGAAGATGAA AATGACAAGA 961 AGCAAAATGC CCAGTCTTCG GACGAGTCCT TTGAGCCTTA CCCAGAAAGG AAAGTCTCTG 1021 GTAAGAAGAG TGAAAGCAAA GAAGCCAAGA AGTCTGAAGA ACCAAGAATT CGGAAGAAGC 1081 CGGGACCCAA GCCCGGATGG AAGAAGAAGC TTCGTTGTGA GAGGGAGGAG CTTCCCACCA 1141 TCCACAAGTG TCCTTACCAG GGCTGCACGG CCGTGTACCG AGGCGCTGAC GGCATGAAGA 1201 AGCACATCAA GGAGCACCAC GAGGAGGTCC GGGAGCGGCC CTGCCCCCAC CCTGGCTGCA 1261 ACAAGGTTTT CATGATCGAC CGCTACCTGC AGCGCCACGT GAAGCTCATC CACACAGAGG 1321 TGCGGAACTA TATCTGTGAC GAATGTGGAC AAACCTTCAA GCAGCGGAAG CACCTTCTCG 1381 TCCACCAAAT GCGACATTCG GGAGCCAAGC CTTTGCAGTG TGAGGTCTGT GGGTTCCAGT 1441 GCAGGCAGCG GGCATCCCTC AAGTACCACA TGACCAAACA CAAGGCTGAG ACTGAGCTGG 1501 ACTTTGCCTG TGACCAGTGT GGCCGGCGGT TTGAGAAGGC CCACAACCTC AATGTACACA 1561 TGTCCATGGT GCACCCGCTG ACACAGACCC AGGACAAGGC CCTGCCCCTG GAGGCGGAAC 1621 CACCACCTGG GCCACCGAGC CCCTCTGTGA CCACAGAGGG CCAGGCGGTG AAGCCCGAAC 1681 CCACCTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1741 gttgcaacga ac