Construct: ORF ccsbBroadEn_09369
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008548.1_s300c1, BRDN0000390645
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BIRC8 (112401)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 331 | XIAP | X-linked inhibitor of apopt... | NM_001167.3 | 41.2% | 37.8% | (many diffs) |
| 2 | human | 331 | XIAP | X-linked inhibitor of apopt... | NM_001204401.1 | 41.2% | 37.8% | (many diffs) |
| 3 | human | 331 | XIAP | X-linked inhibitor of apopt... | XM_006724754.2 | 41.2% | 37.8% | (many diffs) |
| 4 | human | 331 | XIAP | X-linked inhibitor of apopt... | XM_011531329.2 | 41.2% | 37.8% | (many diffs) |
| 5 | human | 112401 | BIRC8 | baculoviral IAP repeat cont... | NR_159880.1 | 38.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 774
- ORF length:
- 708
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GGGTTATGAA GCCCGGCTCA TTACTTTTGG GACATGGATG TACTCCGTTA 121 ACAAAGAGCA GCTTGCAAGA GCTGGATTTT ATGCTATAGG TCAAGAGGAT AAAGTACAGT 181 GCTTTCACTG TGGAGGAGGG CTAGCCAACT GGAAGCCCAA GGAAGATCCT TGGGAACAGC 241 ATGCTAAATG GTATCCAGGT TGCAAATATC TGCTAGAAGA GAAGGGACAT GAATATATAA 301 ACAACATTCA TTTAACCCGT TCACTTGAGG GAGCTCTGGT ACAAACTACC AAGAAAACAC 361 CATCACTAAC TAAAAGAATC AGTGATACCA TCTTCCCTAA TCCTATGCTA CAAGAAGCTA 421 TACGAATGGG ATTTGATTTC AAGGACGTTA AGAAAATAAT GGAGGAAAGA ATTCAAACAT 481 CTGGGAGCAA CTATAAAACG CTTGGGGTTC TTGTTGCAGA TCTAGTGAGC GCTCAGAAAG 541 ACACTACAGA AAATGAATTG AATCAGACTT CATTGCAGAG AGAAATCAGC CCTGAAGAGC 601 CGCTAAGGCG TCTGCAAGAG GAGAAGCTTT GTAAAATCTG CATGGACAGA CATATCGCTG 661 TTGTTTTTAT TCCTTGTGGA CATCTGGTCA CTTGTAAACA ATGTGCTGAA GCAGTTGACA 721 GATGTCCCAT GTGCAGCATG GTTATTGATT TCAAGCAAAG AGTTTTTATG TCTTACCCAA 781 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac