Construct: ORF ccsbBroadEn_09383

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005233.1_s300c1, BRDN0000392657
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CFAP36 (112942)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 112942 CFAP36 cilia and flagella associat... NM_080667.6 99.8% 99.4% 728A>G;736A>T
2 human 112942 CFAP36 cilia and flagella associat... NM_001282761.1 93% 92.6% 115_189del;803A>G;811A>T
3 human 112942 CFAP36 cilia and flagella associat... XM_017003254.1 64.7% 60.8% (many diffs)
4 human 112942 CFAP36 cilia and flagella associat... XM_017003255.1 64.7% 60.8% (many diffs)
5 human 112942 CFAP36 cilia and flagella associat... XM_011532499.1 55% 54.6% 0_1ins459;269A>G;277A>T
6 mouse 216618 Cfap36 cilia and flagella associat... NM_025740.3 88.4% 90.6% (many diffs)
7 mouse 216618 Cfap36 cilia and flagella associat... XM_017314441.1 47.9% 47.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1092
ORF length:
1026
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGCGGAAGAA GAAGACGAGG TGGAGTGGGT AGTGGAGAGC ATCGCGGGGT
121TCCTGCGAGG CCCAGACTGG TCCATCCCCA TCTTGGACTT TGTGGAACAG AAATGTGAAG
181TTTTTGATGA TGAAGAAGAA AGCAAATTGA CCTATACAGA GATTCATCAG GAATACAAAG
241AACTAGTTGA AAAGCTGTTA GAAGGTTACC TCAAAGAAAT TGGAATTAAT GAAGATCAAT
301TTCAAGAAGC ATGCACTTCT CCTCTTGCAA AGACCCATAC ATCACAGGCC ATTTTGCAAC
361CTGTGTTGGC AGCAGAAGAT TTTACTATCT TTAAAGCAAT GATGGTCCAG AAAAACATTG
421AAATGCAGCT GCAAGCCATT CGAATAATTC AAGAGAGAAA TGGTGTATTA CCTGACTGCT
481TAACCGATGG CTCTGATGTG GTCAGTGACC TTGAACACGA AGAGATGAAA ATCCTGAGGG
541AAGTTCTTAG AAAATCAAAA GAGGAATATG ACCAGGAAGA AGAAAGGAAG AGGAAAAAAC
601AGTTATCAGA GGCTAAAACA GAAGAGCCCA CAGTGCATTC CAGTGAAGCT GCAATAATGA
661ATAATTCCCA AGGGGATGGT GAACATTTTG CACACCCACC CTCAGAAGTT AAAATGCATT
721TTGCTAATCA GTCAATAGAA CCTTTGGGAA GAAAAGTGGA AAGGTCTGAA ACTTCCTCCC
781TCCCACAAAA AGGCCTGAAG TTTCCTGGCT TAGAGCATGC GAGCATTGAA GGACCAATAG
841CAAACTTATC AGTACTTGGA ACAGAAGAAC TTCGGCAACG AGAACACTAT CTCAAGCAGA
901AGAGAGATAA GTTGATGTCC ATGAGAAAGG ATATGAGGAC TAAACAGATA CAAAATATGG
961AGCAGAAAGG AAAACCCACT GGGGAGGTAG AGGAAATGAC AGAGAAACCA GAAATGACAG
1021CAGAGGAGAA GCAAACATTA CTAAAGAGGA GATTGCTTGC AGAGAAACTC AAAGAAGAAG
1081TTATTAATAA GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1141caatttgttg caacgaac

Download FASTA (ORF) (Full)