Transcript: Human NM_080667.6

Homo sapiens cilia and flagella associated protein 36 (CFAP36), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
CFAP36 (112942)
Length:
1324
CDS:
208..1236

Additional Resources:

NCBI RefSeq record:
NM_080667.6
NBCI Gene record:
CFAP36 (112942)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_080667.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137181 GCGAGCATTGAAGGACCAATA pLKO.1 961 CDS 100% 10.800 7.560 N CFAP36 n/a
2 TRCN0000343460 GCGAGCATTGAAGGACCAATA pLKO_005 961 CDS 100% 10.800 7.560 N CFAP36 n/a
3 TRCN0000134138 CAAGCAGAAGAGAGATAAGTT pLKO.1 1035 CDS 100% 5.625 3.938 N CFAP36 n/a
4 TRCN0000133983 CTTGAACACGAAGAGATGAAA pLKO.1 652 CDS 100% 5.625 3.938 N CFAP36 n/a
5 TRCN0000343417 CTTGAACACGAAGAGATGAAA pLKO_005 652 CDS 100% 5.625 3.938 N CFAP36 n/a
6 TRCN0000134072 GAGAAAGGATATGAGGACTAA pLKO.1 1065 CDS 100% 4.950 3.465 N CFAP36 n/a
7 TRCN0000343461 GAGAAAGGATATGAGGACTAA pLKO_005 1065 CDS 100% 4.950 3.465 N CFAP36 n/a
8 TRCN0000137262 GATGTGGTCAGTGACCTTGAA pLKO.1 637 CDS 100% 4.950 3.465 N CFAP36 n/a
9 TRCN0000136179 GCAACGAGAACACTATCTCAA pLKO.1 1017 CDS 100% 4.950 3.465 N CFAP36 n/a
10 TRCN0000352921 GCAACGAGAACACTATCTCAA pLKO_005 1017 CDS 100% 4.950 3.465 N CFAP36 n/a
11 TRCN0000136122 GAAACCAGAAATGACAGCAGA pLKO.1 1146 CDS 100% 2.640 1.848 N CFAP36 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080667.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09383 pDONR223 100% 99.8% 99.4% None 728A>G;736A>T n/a
2 ccsbBroad304_09383 pLX_304 0% 99.8% 99.4% V5 728A>G;736A>T n/a
3 TRCN0000467508 ACTTGTTACGTTATGCCGCGTAAC pLX_317 38.3% 99.8% 99.4% V5 728A>G;736A>T n/a
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