Construct: ORF ccsbBroadEn_09447
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007115.1_s300c1, BRDN0000386813
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT15 (117248)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | NM_054110.5 | 99.8% | 99.8% | 810G>A;1294G>A |
| 2 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | NM_001319051.2 | 94.9% | 92.7% | (many diffs) |
| 3 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | XM_005264852.5 | 92.5% | 92.3% | (many diffs) |
| 4 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | XM_017005682.2 | 58.1% | 58% | 0_1ins801;9G>A;493G>A |
| 5 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | XM_017005683.2 | 58.1% | 58% | 0_1ins801;9G>A;493G>A |
| 6 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | XM_017005684.2 | 53.3% | 51.3% | (many diffs) |
| 7 | human | 117248 | GALNT15 | polypeptide N-acetylgalacto... | NM_001319052.1 | 26.4% | 26.4% | 0_1ins1410 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1983
- ORF length:
- 1917
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT CCTAAGGAAG CGATACAGGC ACAGACCATG CAGACTCCAG TTCCTCCTGC 121 TGCTCCTGAT GCTGGGATGC GTCCTGATGA TGGTGGCGAT GTTGCACCCT CCCCACCACA 181 CCCTGCACCA GACTGTCACA GCCCAAGCCA GCAAGCACAG CCCTGAAGCC AGGTACCGCC 241 TGGACTTTGG GGAATCCCAG GATTGGGTAC TGGAAGCTGA GGATGAGGGT GAAGAGTACA 301 GCCCTCTGGA GGGCCTGCCA CCCTTTATCT CACTGCGGGA GGATCAGCTG CTGGTGGCCG 361 TGGCCTTACC CCAGGCCAGA AGGAACCAGA GCCAGGGCAG GAGAGGTGGG AGCTACCGCC 421 TCATCAAGCA GCCAAGGAGG CAGGATAAGG AAGCCCCAAA GAGGGACTGG GGGGCTGATG 481 AGGACGGGGA GGTGTCTGAA GAAGAGGAGT TGACCCCGTT CAGCCTGGAC CCACGTGGCC 541 TCCAGGAGGC ACTCAGTGCC CGCATCCCCC TCCAGAGGGC TCTGCCCGAG GTGCGGCACC 601 CACTGTGTCT GCAGCAGCAC CCTCAGGACA GCCTGCCCAC AGCCAGCGTC ATCCTCTGTT 661 TCCATGATGA GGCCTGGTCC ACTCTCCTGC GGACTGTACA CAGCATCCTC GACACAGTGC 721 CCAGGGCCTT CCTGAAGGAG ATCATCCTCG TGGACGACCT CAGCCAGCAA GGACAACTCA 781 AGTCTGCTCT CAGCGAATAT GTGGCCAGGC TGGAGGGGGT GAAGTTACTC AGGAGCAACA 841 AGAGGCTGGG TGCCATCAGG GCCCGGATGC TGGGAGCCAC CAGAGCCACC GGGGATGTGC 901 TCGTCTTCAT GGATGCCCAC TGCGAGTGCC ACCCAGGCTG GCTGGAGCCC CTCCTCAGCA 961 GAATAGCTGG TGACAGGAGC CGAGTGGTAT CTCCGGTGAT AGATGTGATT GACTGGAAGA 1021 CTTTCCAGTA TTACCCCTCA AAGGACCTGC AGCGTGGGGT GTTGGACTGG AAGCTGGATT 1081 TCCACTGGGA ACCTTTGCCA GAGCATGTGA GGAAGGCCCT CCAGTCCCCC ATAAGCCCCA 1141 TCAGGAGCCC TGTGGTGCCC GGAGAGGTGG TGGCCATGGA CAGACATTAC TTCCAAAACA 1201 CTGGAGCGTA TGACTCTCTT ATGTCGCTGC GAGGTGGTGA AAACCTCGAA CTGTCTTTCA 1261 AGGCCTGGCT CTGTGGTGGC TCTGTTGAAA TCCTTCCCTG CTCTCGGGTA GGACACATCT 1321 ACCAAAATCA GGATTCCCAT TCCCCCCTCG ACCAGGAGAC CACCCTGAGG AACAGGGTTC 1381 GCATTGCTGA GACCTGGCTG GGGTCATTCA AAGAAACCTT CTACAAGCAT AGCCCAGAGG 1441 CCTTCTCCTT GAGCAAGGCT GAGAAGCCAG ACTGCATGGA ACGCTTGCAG CTGCAAAGGA 1501 GACTGGGTTG TCGGACATTC CACTGGTTTC TGGCTAATGT CTACCCTGAG CTGTACCCAT 1561 CTGAACCCAG GCCCAGTTTC TCTGGAAAGC TCCACAACAC TGGACTTGGG CTCTGTGCAG 1621 ACTGCCAGGC AGAAGGGGAC ATCCTGGGCT GTCCCATGGT GTTGGCTCCT TGCAGTGACA 1681 GCCGGCAGCA ACAGTACCTG CAGCACACCA GCAGGAAGGA GATTCACTTT GGCAGCCCAC 1741 AGCACCTGTG CTTTGCTGTC AGGCAGGAGC AGGTGATTCT TCAGAACTGC ACGGAGGAAG 1801 GCCTGGCCAT CCACCAGCAG CACTGGGACT TCCAGGAGAA TGGGATGATT GTCCACATTC 1861 TTTCTGGGAA ATGCATGGAA GCTGTGGTGC AAGAAAACAA TAAAGATTTG TACCTGCGTC 1921 CGTGTGATGG AAAAGCCCGC CAGCAGTGGC GTTTTGACCA GATCAATGCT GTGGATGAAC 1981 GATGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 2041 gcaacgaac