Construct: ORF ccsbBroadEn_09464
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007933.1_s300c1, BRDN0000386990
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC36A4 (120103)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 120103 | SLC36A4 | solute carrier family 36 me... | NM_152313.4 | 99.6% | 99% | (many diffs) |
| 2 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_024448341.1 | 95.9% | 95.6% | (many diffs) |
| 3 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_017017174.1 | 80.4% | 78.3% | (many diffs) |
| 4 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_017017175.1 | 78.7% | 78.3% | (many diffs) |
| 5 | human | 120103 | SLC36A4 | solute carrier family 36 me... | NM_001286139.2 | 72.9% | 72.6% | (many diffs) |
| 6 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_017017176.1 | 72.9% | 72.6% | (many diffs) |
| 7 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_024448342.1 | 72.9% | 72.6% | (many diffs) |
| 8 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_024448343.1 | 57.7% | 57.5% | (many diffs) |
| 9 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_024448344.1 | 57.7% | 57.5% | (many diffs) |
| 10 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XM_017017177.2 | 53.7% | 51.9% | (many diffs) |
| 11 | human | 120103 | SLC36A4 | solute carrier family 36 me... | XR_001747768.1 | 23.7% | (many diffs) | |
| 12 | mouse | 234967 | Slc36a4 | solute carrier family 36 (p... | NM_172289.4 | 82.5% | 87.8% | (many diffs) |
| 13 | mouse | 234967 | Slc36a4 | solute carrier family 36 (p... | XM_006510170.3 | 80% | 85.7% | (many diffs) |
| 14 | mouse | 234967 | Slc36a4 | solute carrier family 36 (p... | XM_006510172.2 | 61.1% | 64.6% | (many diffs) |
| 15 | mouse | 234967 | Slc36a4 | solute carrier family 36 (p... | XM_017313295.1 | 59.6% | 61.2% | (many diffs) |
| 16 | mouse | 234967 | Slc36a4 | solute carrier family 36 (p... | XM_017313296.1 | 45.4% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1578
- ORF length:
- 1512
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacAAAAAAG 61 TTGGCATGGA AGCGGCGTCG TCGCCGGCGG CTGCCGGGGC GGCGAGGCGC GAGGAGCTAG 121 ATATGGATGT AATGAGGCCC TTGATAAATG AGCAGAATTT TGATGGGACA TCAGATGAAG 181 AACATGAGCA AGAGCTTCTG CCTGTTCAGA AGCATTACCA ACTTGATGAT CAAGAGGGCA 241 TTTCATTTGT ACAAACTCTT ATGCACCTTC TTAAAGGAAA TATTGGAACT GGCCTTTTAG 301 GACTTCCATT GGCAATAAAA AATGCAGGCA TAGTGCTTGG ACCAATCAGC CTTGTGTTTA 361 TAGGAATTAT TTCTGTTCAC TGTATGCACA TATTGGTACG TTGCAGTCAC TTTCTATGTC 421 TGAGGTTTAA AAAGTCAACA TTAGGTTATA GTGACACTGT GAGCTTTGCT ATGGAAGTGA 481 GTCCTTGGAG TTGTCTTCAG AAGCAAGCAG CATGGGGGCG GAGTGTGGTT GACTTTTTTC 541 TGGTGATAAC ACAGCTGGGA TTCTGTAGTG TTTATATTGT CTTCTTAGCT GAAAATGTGA 601 AACAAGTTCA TGAAGGATTC CTGGAGAGTA AAGTGTTTAT TTCAAATAGT ACCAATTCAT 661 CAAACCCTTG TGAGAGAAGA AGTGTTGACA TAAGGATATA TATGCTTTGC TTTCTTCCAT 721 TTATAATTCT TTTGGTCTTC ATTCGTGAAC TAAAGAATCT ATTTGTACTT TCATTCCTTG 781 CCAACGTTTC CATGGCTGTC AGTCTTGTGA TAATTTACCA GTATGTTGTC AGGAACATGC 841 CAGATCCCCA CAACCTTCCA ATAGTGGCTG GTTGGAAGAA ATACCCACTC TTTTTTGGTA 901 CTGCTGTATT TGCTTTTGAA GGCATAGGAG TGGTCCTTCC ACTGGAAAAC CAAATGAAAG 961 AATCAAAGCG TTTCCCTCAA GCGTTGAATA TTGGCATGGG GATTGTTACA ACTTTGTATG 1021 TAACATTAGC TACTTTAGGA TATATGTGTT TCCATGATGA AATCAAAGGC AGCATAACTT 1081 TAAATCTTCC CCAAGATGTA TGGTTATATC AATCAGTGAA AATTCTATAT TCGTTTGGCA 1141 TTTTTGTGAC ATATTCAATT CAGTTCTATG TTCCAGCAGA GATCATTATC CATGGGATCA 1201 CATCCAAATT TCATACTAAA TGGAAGCAAA TCTGTGAATT TGGGATAAGA TCCTTCTTGG 1261 TTAGTATTAC TTGTGCCGGA GCAATTCTTA TTCCTCGTTT AGACATTGTG ATTTCCTTCG 1321 TTGGAGCTGT GAGCAGCAGC ACATTGGCCA TAATCCTGCC ACCTTTGGTT GAAATTCTTA 1381 CATTTTCGAA GGAACATTAT AATATATGGA TGGTCCTGAA AAATATTTCT ATAGCATTCA 1441 CTGGAGTTGT TGGCTTCTTA TTAGGTACAT ATATAACTGT TGAAGAAATT ATTTATCCTA 1501 CTCCCAAAGT TGTAGCTGGC ACTCCACAGA GTCCTTTTCT AAATTTGAAT TCAACATGCT 1561 TAACATCTGG TTTGAAATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1621 gcttatcaat ttgttgcaac gaac