Construct: ORF ccsbBroadEn_09471
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003485.1_s300c1, BRDN0000392618
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1A1L (122011)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 99.8% | 99.4% | 126C>A;674G>A |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 91.6% | 91% | (many diffs) |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 88.3% | 89% | (many diffs) |
| 4 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 84.6% | 84.1% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 63.4% | 63.8% | (many diffs) |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 90.1% | 91% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 86.7% | 89% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 83.1% | 84.1% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 83.1% | 84.1% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 81.3% | 81.4% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 81.3% | 82.3% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 80.8% | 82% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 80.1% | 82.1% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.1% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 12.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1077
- ORF length:
- 1011
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AAACAACAGC GGCTCCAAAG CCGAACTCGT TGTGGGAGGG AAATACAAAC 121 TGGTGCGGAA GATCGGGTCT GGCTCCTTTG GAGACGTTTA TCTGGGCATC ACCACCACCA 181 ACGGCGAGGA AGTAGCAGTG AAGCTGGAAT CTCAGAAGGT CAAGCACCCC CAGTTGCTGT 241 ATGAGAGCAA ACTCTACACG ATTCTTCAAG GTGGGGTTGG CATCCCCCAC ATGCACTGGT 301 ATGGTCAGGA AAAAGACAAC AATGTGCTAG TCATGGACCT TCTGGGACCC AGCCTCGAAG 361 ACCTCTTTAA TTTCTGTTCA AGAAGGTTCA CCATGAAAAC TGTACTTATG TTAGCCGACC 421 AGATGATCAG CAGAATTGAA TACGTGCATA CAAAGAATTT TCTACACCGA GACATTAAAC 481 CAGATAACTT CCTGATGGGT ACTGGGCGTC ACTGTAATAA GTTGTTCCTT ATTGATTTTG 541 GTTTGGCCAA AAAGTACAGA GACAACAGGA CCAGGCAACA CATACCGTAC AGAGAAGATA 601 AACACCTCAT TGGCACTGTC CGATATGCCA GCATCAATGC ACATCTTGGT ATTGAGCAGA 661 GCCGCCGAGA TGACATGGAA TCCTTAGGCT ACGTTTTCAT GTATTTTAAT AGAACCAGCC 721 TGCCGTGGCA AGGACTAAAG GCTATGACAA AAAAACAAAA ATATGAAAAG ATTAGTGAGA 781 AGAAGATGTC CACCCCTGTT GAAGTTTTAT GTAAGGGGTT TCCTGCAGAA TTCGCCATGT 841 ACTTGAACTA CTGTCGTGGG CTGCGCTTTG AGGAAGTCCC AGATTACATG TATCTGAGGC 901 AGCTATTCCG CATTCTTTTC AGGACCCTGA ACCACCAATA TGACTACACA TTTGATTGGA 961 CGATGTTAAA GCAGAAAGCA GCACAGCAGG CAGCCTCTTC CAGTGGGCAG GGTCAGCAGG 1021 CCCAAACCCA GACAGGCAAG CAAACTGAAA AAAACAAGAA TAATGTGAAA GATAACTACC 1081 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1141 aac