Construct: ORF ccsbBroadEn_09481
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018346.1_s300c1, BRDN0000397249
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H18 (124245)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124245 | ZC3H18 | zinc finger CCCH-type conta... | NM_144604.4 | 99.9% | 99.8% | 474A>G;1319G>A |
| 2 | human | 124245 | ZC3H18 | zinc finger CCCH-type conta... | NM_001294340.2 | 97.4% | 97.4% | 474A>G;685_756del;1391G>A |
| 3 | human | 124245 | ZC3H18 | zinc finger CCCH-type conta... | XM_011522863.2 | 84.3% | 84.3% | 474A>G;685_756del;1160_1161ins387 |
| 4 | human | 124245 | ZC3H18 | zinc finger CCCH-type conta... | XM_011522865.1 | 51.6% | 48.2% | 0_1ins1114;92_93ins269 |
| 5 | human | 124245 | ZC3H18 | zinc finger CCCH-type conta... | XM_017022934.2 | 44.6% | 39.9% | (many diffs) |
| 6 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | NM_001029994.1 | 85.2% | 90.6% | (many diffs) |
| 7 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | NM_001029993.1 | 83.1% | 88.4% | (many diffs) |
| 8 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | XM_006531470.2 | 82.1% | 87.3% | (many diffs) |
| 9 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | NM_001310650.1 | 81.1% | 86.1% | (many diffs) |
| 10 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | XM_006531469.3 | 80.2% | 85.2% | (many diffs) |
| 11 | mouse | 76014 | Zc3h18 | zinc finger CCCH-type conta... | XM_011248538.1 | 78.2% | 83.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2925
- ORF length:
- 2859
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGTGGCCGAG AGCCCTGAAC GGGATCCTCA CTCTCCAGAG GATGAAGAGC 121 AGCCACAGGG ACTCTCGGAC GATGACATTC TGAGGGACAG CGGGTCCGAT CAGGATTTGG 181 ACGGGGCGGG GGTGAGGGCT TCTGATCTGG AGGATGAGGA AAGTGCAGCC AGGGGGCCGA 241 GCCAGGAGGA GGAAGATAAT CACTCCGACG AGGAGGACCG GGCAAGTGAG CCTAAATCCC 301 AAGACCAGGA CTCAGAGGTG AATGAGCTGA GCCGGGGCCC GACCAGCTCC CCCTGCGAGG 361 AGGAGGGGGA CGAAGGGGAG GAAGACCGGA CAAGCGACCT TAGGGATGAG GCCTCCTCAG 421 TCACCAGGGA GCTGGATGAG CATGAGCTAG ACTACGATGA GGAGGTTCCT GAGGAGCCAG 481 CTCCCGCCGT CCAGGAGGAC GAGGCTGAGA AAGCGGGGGC TGAGGATGAT GAGGAGAAGG 541 GCGAAGGCAC TCCCAGGGAG GAGGGGAAGG CTGGTGTTCA GAGTGTGGGA GAAAAGGAAT 601 CCCTGGAGGC TGCCAAGGAG AAAAAGAAAG AGGACGATGA TGGAGAAATC GATGATGGGG 661 AAATAGACGA TGATGACCTG GAAGAAGGTG AAGTGAAGGA CCCCAGTGAC AGGAAGGTGA 721 GGCCTCGTCC CACCTGCCGG TTCTTCATGA AAGGGAACTG TACCTGGGGA ATGAATTGTA 781 GGTTTATACA CCCTGGAGTG AACGACAAGG GGAACTACTC CCTAATCACC AAAGCCGACC 841 CCTTCCCGCC TAATGGTGCC CCGCCTCTCG GACCTCACCC GCTGATGCCC GCCAACCCTT 901 GGGGTGGGCC GGTAGTTGAT GAAATTTTGC CTCCACCCCC TCCAGAGCCC CCAACAGAGA 961 GTGCCTGGGA ACGAGGACTC CGGCATGCAA AGGAGGTTTT AAAAAAAGCA ACTATTCGAA 1021 AAGAACAGGA GCCTGATTTT GAAGAGAAAA GGTTTACGGT GACCATTGGC GAAGACGAAC 1081 GGGAATTTGA CAAAGAAAAT GAAGTTTTTC GAGATTGGAA TTCTCGGATC CCGAGAGATG 1141 TCAGAGACAC AGTACTCGAG CCTTACGCAG ACCCTTATTA TGACTATGAA ATTGAGCGGT 1201 TTTGGCGTGG CGGACAGTAT GAGAATTTCA GGGTGCAGTA TACAGAAACA GAGCCGTATC 1261 ATAATTACCG AGAAAGGGAG CGGGAGCGAG AGAGAGAGAA CAGACAGCGC GAGCGCGAGC 1321 GGGAGCGGGA GCGGGACCGA GAGCGGGAGC GCCGGCAGAG GGAGCGCGAG CGAGAGCGGG 1381 AGCACGAGCG CGACAAGGAG CGGCAGCGGA GGAAGGAGGA GTGGGAGCGT GAGCGAGCCA 1441 AGCGGGACGA GAAGGACCGG CAGCACCGTG ACCGCGACCG GGAGAAGGAG CGGGAGAAGG 1501 AGAAGGGGAA GCCCAAGCCC CGCTCCCCGC AGCCGCCAAG CCGCCAAGCT GAGCCACCAA 1561 AGAAGGAGGC TGCCACCACG GGGCCGCAGG TGAAGAGAGC AGATGAGTGG AAGGACCCTT 1621 GGCGCCGATC CAAGTCTCCC AAGAAGAAAC TCGGGGTGTC GGTCTCCCCG AGCCGGGCTC 1681 GAAGGCGTCG GAAAACATCA GCCTCGTCAG CCTCTGCCTC TAATTCCTCC AGGTCGTCTT 1741 CGCGGTCATC GTCCTACTCT GGCTCCGGCT CCTCCCGGTC GCGATCCCGG TCTTCATCCT 1801 ACAGCTCCTA CTCCAGCCGC TCTTCCAGAC ACAGCTCGTT CTCAGGAAGC CGGTCCAGGT 1861 CCCGGTCCTT CTCTTCGTCC CCGTCCCCGT CCCCAACACC TTCCCCACAT AGACCTTCCA 1921 TCAGAACCAA GGGAGAGCCG GCCCCGCCGC CCGGGAAAGC AGGAGAGAAG TCAGTGAAGA 1981 AGCCGGCCCC GCCTCCAGCC CCACCACAGG CCACCAAAAC CACTGCTCCT GTCCCCGAGC 2041 CCACCAAGCC AGGAGACCCT CGGGAAGCCA GGAGGAAGGA GCGGCCAGCC AGGACCCCCC 2101 CCAGGAGGCG GACGCTAAGC GGCAGCGGCA GTGGCAGTGG TAGCAGCTAT AGTGGTTCCA 2161 GCTCCCGATC CAGGTCCCTG AGCGTGAGCA GCGTCTCCTC AGTGTCCAGT GCTACGTCGA 2221 GCAGCAGCTC TGCACACAGC GTGGACTCGG AGGACATGTA CGCAGACCTG GCTAGCCCCG 2281 TGTCCTCAGC CAGCTCTCGG TCCCCGGCCC CAGCCCAGAC CAGGAAGGAG AAAGGAAAAT 2341 CTAAGAAAGA AGACGGTGTT AAAGAGGAAA AGCGGAAAAG GGATTCGTCC ACACAACCAC 2401 CCAAATCTGC AAAACCTCCA GCAGGGGGGA AGTCCTCCCA GCAGCCCTCG ACACCCCAGC 2461 AGGCACCCCC CGGGCAGCCC CAGCAGGGCA CATTTGTGGC CCACAAGGAG ATCAAGTTGA 2521 CACTGTTGAA TAAGGCGGCT GATAAAGGAA GCAGGAAGCG CTATGAACCA TCAGACAAGG 2581 ACAGGCAGAG CCCTCCTCCA GCCAAGCGGC CCAACACATC CCCAGACCGA GGTTCTCGGG 2641 ACCGGAAGTC AGGTGGGAGA CTGGGCTCCC CGAAGCCAGA GCGGCAGAGA GGCCAGAACT 2701 CCAAAGCCCC TGCAGCCCCG GCTGACAGGA AGCGCCAGCT GTCACCCCAG TCCAAGAGCT 2761 CCAGCAAGGT CACGAGCGTG CCCGGCAAAG CCTCGGATCC CGGCGCCGCC AGCACCAAAT 2821 CAGGGAAGGC CAGCACGCTG TCTCGGCGGG AGGAGCTGCT GAAACAGCTG AAGGCCGTGG 2881 AGGATGCTAT TGCACGCAAG CGGGCCAAGA TCCCCGGGAA AGCATACCCA ACTTTCTTGT 2941 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c