Transcript: Mouse XM_006531469.3

PREDICTED: Mus musculus zinc finger CCCH-type containing 18 (Zc3h18), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zc3h18 (76014)
Length:
4469
CDS:
757..3783

Additional Resources:

NCBI RefSeq record:
XM_006531469.3
NBCI Gene record:
Zc3h18 (76014)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531469.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123494 GCCTAAAGTCTGATTGGGAAA pLKO.1 4274 3UTR 100% 4.050 5.670 N Zc3h18 n/a
2 TRCN0000294972 TCCCTGGATCAGAAGTATATA pLKO_005 4216 3UTR 100% 15.000 12.000 N Zc3h18 n/a
3 TRCN0000123497 CTTAAACAGCTCAAAGCGGTT pLKO.1 3715 CDS 100% 2.160 1.728 N Zc3h18 n/a
4 TRCN0000294974 GGGAATGAGCTGTAGGTTTAT pLKO_005 1626 CDS 100% 13.200 9.240 N Zc3h18 n/a
5 TRCN0000307481 AGATCGATGATGGCGAGATAG pLKO_005 1433 CDS 100% 10.800 7.560 N Zc3h18 n/a
6 TRCN0000294973 ATGAGCATGAACTAGACTATG pLKO_005 1223 CDS 100% 10.800 7.560 N Zc3h18 n/a
7 TRCN0000123495 GCCAGGTTAAAGGAAACTGCA pLKO.1 1601 CDS 100% 2.640 1.848 N Zc3h18 n/a
8 TRCN0000123498 TGAAAGATGTTGTGACACCAT pLKO.1 1535 CDS 100% 2.640 1.848 N Zc3h18 n/a
9 TRCN0000123496 GACTATGAGATAGAACGGTTT pLKO.1 2041 CDS 100% 4.050 2.430 N Zc3h18 n/a
10 TRCN0000287483 GACTATGAGATAGAACGGTTT pLKO_005 2041 CDS 100% 4.050 2.430 N Zc3h18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531469.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09481 pDONR223 100% 80.2% 85.2% None (many diffs) n/a
2 ccsbBroad304_09481 pLX_304 0% 80.2% 85.2% V5 (many diffs) n/a
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