Construct: ORF ccsbBroadEn_09507

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005332.1_s300c1, BRDN0000389860
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PODN (127435)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 127435 PODN podocan XM_017000294.2 95.2% 94.4% (many diffs)
2 human 127435 PODN podocan NM_001199080.4 92.5% 92.5% (many diffs)
3 human 127435 PODN podocan NM_001199081.3 92.5% 92.5% (many diffs)
4 human 127435 PODN podocan NM_153703.5 92.5% 92.5% (many diffs)
5 human 127435 PODN podocan XM_005270457.3 92.5% 92.5% (many diffs)
6 human 127435 PODN podocan XR_001736973.2 64.6% (many diffs)
7 human 127435 PODN podocan XM_011540677.2 60.7% 60.6% 0_1ins777;624G>A;782T>C
8 mouse 242608 Podn podocan NM_001285956.1 80.1% 84.7% (many diffs)
9 mouse 242608 Podn podocan NM_001285958.1 80.1% 84.7% (many diffs)
10 mouse 242608 Podn podocan NM_172874.3 80.1% 84.7% (many diffs)
11 mouse 242608 Podn podocan XM_006503092.4 80.1% 84.7% (many diffs)
12 mouse 242608 Podn podocan XM_011240532.1 52.9% 56.4% (many diffs)
13 mouse 242608 Podn podocan XM_011240534.1 52.9% 56.4% (many diffs)
14 mouse 242608 Podn podocan XM_030253568.1 52.9% 56.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2049
ORF length:
1983
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGGAGCCCGA GCCCGCGGAG CGCAGCTGAG ACTGGGGGAG CGCGTTCGGC
121CTGTGGGGCG CCGCTCGGCG CCGGGGCGCA GCAGGTTCCA TCAGCCCTGG CGCCCAGGCG
181CATCTGACTC GGCACCCCCT GCAGGCACCA TGGCCCAGAG CCGGGTGCTG CTGCTCCTGC
241TGCTGCTGCC GCCACAGCTG CACCTGGGAC CTGTGCTTGC CGTGAGGGCC CCAGGATTTG
301GCCGAAGTGG CGGCCACAGC CTGAGCCCCG AAGAGAACGA ATTTGCGGAG GAGGAGCCGG
361TGCTGGTACT GAGCCCTGAG GAGCCCGGGC CTGGCCCAGC CGCGGTCAGC TGCCCCCGAG
421ACTGTGCCTG TTCCCAGGAG GGCGTCGTGG ACTGTGGCGG TATTGACCTG CGTGAGTTCC
481CGGGGGACCT GCCTGAGCAC ACCAACCACC TATCTCTGCA GAACAACCAG CTGGAAAAGA
541TCTACCCTGA GGAGCTCTCC CGGCTGCACC GGCTGGAGAC ACTGAACCTG CAAAACAACC
601GCCTGACTTC CCGAGGGCTC CCAGAGAAGG CGTTTGAGCA TCTGACCAAC CTCAATTACC
661TGTACTTGGC CAATAACAAG CTGACCTTGG CACCCCGCTT CCTGCCAAAC GCCCTGATCA
721GTGTGGACTT TGCTGCCAAC TATCTCACCA AGATCTATGG GCTCACCTTT GGCCAGAAGC
781CAAACTTGAG GTCTGTGTAC CTGCACAACA ACAAGCTGGC AGACGCCGGG CTGCCGGACA
841ACATGTTCAA CGGCTCCAGC AACGTCGAGG TCCTCATCCT GTCCAGCAAC TTCCTGCGCC
901ACGTGCCCAA GCACCTGCCG CCTGCCCTGT ACAAGCTGCA CCTCAAGAAC AACAAGCTGG
961AGAAGATCCC CCCGGGGGCC TTCAGCGAGC TGAGCAGCCT GCGCGAGCTA TACCTGCAGA
1021ACAACTACCT GACTGACGAG GGCCTGGACA ACGAGACCTT CTGGAAGCTC TCCAGCCTGG
1081AGTACCTGGA TCTGTCCAGC AACAACCTGT CTCGGGTCCC AGCTGGGCTG CCGCGCAGCC
1141TGGTGCTGCT GCACTTGGAG AAGAACGCCA TCCGGAGCGT GGACGCGAAT GTGCTGACCC
1201CCATCCGCAG CCTGGAGTAC CTGCTGCTGC ACAGCAACCA GCTGCGGGAG CAGGGCATCC
1261ACCCACTGGC CTTCCAGGGC CTCAAGCGGT TGCACACGGT GCACCTGTAC AACAACGCGC
1321TGGAGCGCGT GCCCAGTGGC CTGCCTCGCC GCGTGCGCAC CCTCATGATC CTGCACAACC
1381AGATCACAGG CATTGGCCGC GAAGACTTTG CCACCACCTA CTTCCTGGAG GAGCTCAACC
1441TCAGCTACAA CCGCATCACC AGCCCACAGG TGCACCGCGA CGCCTTCCGC AAGCTGCGCC
1501TGCTGCGCTC GCTGGACCTG TCGGGCAACC GGCTGCACAC GCTGCCACCT GGGCTGCCTC
1561GAAATGTCCA TGTGCTGAAG GTCAAGCGCA ATGAGCTGGC TGCCTTGGCA CGAGGGGCGC
1621TGGCGGGCAT GGCTCAGCTG CGTGAGCTGT ACCTCACCAG CAACCGACTG CGCAGCCGAG
1681CCCTGGGCCC CCGTGCCTGG GTGGACCTCG CCCATCTGCA GCTGCTGGAC ATCGCCGGGA
1741ATCAGCTCAC AGAGATCCCC GAGGGGCTCC CCGAGTCACT TGAGTACCTG TACCTGCAGA
1801ACAACAAGAT TAGTGCGGTG CCCGCCAATG CCTTCGACTC CACGCCCAAC CTCAAGGGGA
1861TCTTTCTCAG GTTTAACAAG CTGGCTGTGG GCTCCGTGGT GGACAGTGCC TTCCGGAGGC
1921TGAAGCACCT GCAGGTCTTG GACATTGAAG GCAACTTAGA GTTTGGTGAC ATTTCCAAGG
1981ACCGTGGCCG CTTGGGGAAG GAAAAGGAGG AGGAGGAAGA GGAGGAGGAG GAGGAAGAGG
2041AAACAAGATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
2101tttgttgcaa cgaac

Download FASTA (ORF) (Full)