Construct: ORF ccsbBroadEn_09688

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014001.1_s300c1, BRDN0000393011
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCFD2 (152579)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152579 SCFD2 sec1 family domain containi... NM_152540.4 99.9% 100% 1458G>A
2 human 152579 SCFD2 sec1 family domain containi... XM_017007786.2 80.4% 77.7% (many diffs)
3 human 152579 SCFD2 sec1 family domain containi... XM_017007787.2 77% 76.7% (many diffs)
4 human 152579 SCFD2 sec1 family domain containi... XM_011534375.3 76.9% 76% (many diffs)
5 human 152579 SCFD2 sec1 family domain containi... XM_011534376.3 76.2% 76% 1458G>A;1561_1562ins22;1566_1567ins464
6 human 152579 SCFD2 sec1 family domain containi... XM_011534378.3 64.8% 64.1% (many diffs)
7 human 152579 SCFD2 sec1 family domain containi... XR_001741148.2 52.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2118
ORF length:
2052
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CGCCTCGGGC GTACTGTCCT TTACCCAGCA AGGATGGGAG CAGGTGCTGG
121CCAAAGTGAA ACGGGCTGTG GTTTACCTGG ACGCCGCCTG CGCCGAGAGC CTGCACTGGG
181GCTGCGGATC CACCCGTCTC CTGGAGGCGG TGGGGGGTCC TGACTGTCAC CTGCGAGAGT
241TCGAGCCCGA CGCAATTGGT GGTGGAGCCA AGCAGCCCAA GGCAGTGTTT GTGCTGAGCT
301GCCTGCTGAA AGGCCGGACC GTGGAGATCC TACGGGACAT CATCTGCCGC AGTCACTTCC
361AGTATTGTGT GGTGGTCACA ACCGTGAGCC ACGCTGTCCA CCTCACAGCT AATCATGTCC
421CAGCGGCGGC AGCGGCCGAG ATGGAGGGGC AGCAGCCGGT GTTCGAGCAG CTGGAGGAGA
481AGCTGTGTGA ATGGATGGGC AACATGAACT ACACGGCCGA GGTGTTCCAT GTCCCGTTAT
541TGCTTGCCCC TGTTGCTCCC CACTTTGCCT TGACTCCAGC TTTTGCATCC CTTTTCCCAC
601TGCTACCCCA GGATGTGCAC CTCCTTAATA GCGCCCGACC GGACAAGAGG AAGCTGGGAA
661GCCTGGGTGA TGTGGACTCC ACTACGCTAA CCCCAGAGCT GCTGCTGCAG ATCAGATGCC
721TAGTGTCAGG CCTCAGTTCT CTGTGTGAAC ATTTAGGAGT ACGGGAGGAG TGTTTTGCTG
781TAGGTTCCTT AAGTCAGGTC ATCGCTGCGG ATCTGGCCAA TTATGCCCCT GCAAAGAACA
841GGAAGAAGAC TGCTGCAGGC AGGGCATCAG TGGTTTTTGT GGACAGAACC CTGGATCTCA
901CAGGAGCAGT TGGACATCAT GGAGACAACT TAGTAGAGAA GATCATTTCA GCACTTCCCC
961AGCTCCCAGG CCACACAAAT GATGTGATGG TTAACATGAT AGCGCTCACT GCACTCCATA
1021CTGAGGAGGA AAATTATAAT GTGGTTGCAC CAGGCTGTCT TTCACAATCC AGTGACACCA
1081CAGCCAAAGC CCTATGGGAA GCTTTACTGA ACACTAAGCA CAAAGAGGCA GTGATGGAAG
1141TTCGGAGACA TCTAGTGGAA GCGGCAAGCA GAGAAAACCT GCCAATCAAG ATGAGTATGG
1201GGAGAGTCAC ACCGGGACAG CTCATGTCCT ATATTCAGCT CTTCAAGAAC AACCTCAAAG
1261CTCTAATGAA TCATTGTGGC CTCCTCCAGC TTGGACTGGC CACAGCTCAA ACGTTGAAAC
1321ACCCACAGAC TGCCAAGTGG GACAACTTTC TGGCTTTTGA AAGGCTCCTT CTTCAGAGCA
1381TTGGGGAGTC AGCAATGTCC GTTGTGTTAA ATCAGCTGCT GCCCATGATT AAGCCTGTAA
1441CCCAGAGAAC CAACGAGGAC TACAGCCCTG AGGAACTGCT GATCCTTCTC ATATATATTT
1501ATTCTGTCAC TGGAGAGCTC ACAGTAGACA AAGACCTGTG TGAAGCAGAA GAAAAAGTCA
1561AGAAAGCATT GGCTCAGGTC TTCTGTGAGG AATCTGGATT GTCACCTTTG CTGCAAAAAA
1621TTACGGACTG GGACTCTTCA ATTAATCTGA CATTTCACAA ATCCAAAATT GCCGTGGATG
1681AACTCTTTAC TTCACTTCGG GATATTGCTG GAGCTCGGAG TCTCCTGAAA CAGTTTAAGT
1741CTGTATATGT TCCTGGAAAT CATACCCACC AGGCATCTTA TAAGCCATTG TTGAAGCAAG
1801TTGTGGAGGA AATATTTCAT CCCGAGAGGC CAGATTCCGT TGATATTGAA CACATGTCTT
1861CAGGCCTCAC TGATCTCCTT AAAACTGGAT TTAGCATGTT CATGAAGGTG AGCCGGCCTC
1921ATCCTAGTGA CTACCCCCTC CTGATCCTCT TTGTGGTAGG TGGGGTCACA GTCTCTGAAG
1981TGAAAATGGT CAAAGATCTT GTGGCATCGT TGAAGCCAGG AACCCAGGTA ATCGTGCTGT
2041CCACACGACT CCTGAAGCCA CTTAACATTC CTGAGCTGTT ATTTGCAACT GACCGACTGC
2101ATCCAGACCT TGGCTTCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2161gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)