Construct: ORF ccsbBroadEn_09694

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000630.1_s300c1, BRDN0000456744
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CREBRF (153222)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 153222 CREBRF CREB3 regulatory factor NM_153607.3 99.9% 99.8% 1447A>G
2 human 153222 CREBRF CREB3 regulatory factor XM_006714822.4 99.9% 99.8% 1447A>G
3 human 153222 CREBRF CREB3 regulatory factor XM_005265821.3 98.6% 98.5% 0_1ins24;1423A>G
4 human 153222 CREBRF CREB3 regulatory factor XM_011534442.1 98.6% 98.5% 0_1ins24;1423A>G
5 human 153222 CREBRF CREB3 regulatory factor NM_001168393.2 64.5% 64% (many diffs)
6 human 153222 CREBRF CREB3 regulatory factor NM_001168394.2 64.5% 64% (many diffs)
7 mouse 77128 Crebrf CREB3 regulatory factor NM_029870.2 89.6% 93.5% (many diffs)
8 mouse 77128 Crebrf CREB3 regulatory factor XM_006525114.2 89.6% 93.5% (many diffs)
9 mouse 77128 Crebrf CREB3 regulatory factor XM_011246717.2 89.6% 93.5% (many diffs)
10 mouse 77128 Crebrf CREB3 regulatory factor XM_017317723.1 89.6% 93.5% (many diffs)
11 mouse 77128 Crebrf CREB3 regulatory factor XM_017317724.1 88.5% 92.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1983
ORF length:
1917
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC TCAGCCTAGT GTAAGCGGAA TGGATCCGCC TTTCGGGGAT GCCTTTCGAA
121GCCACACCTT TTCGGAACAA ACTCTGATGA GCACAGATCT CTTAGCAAAC AGTTCGGATC
181CAGATTTCAT GTATGAACTG GATAGAGAGA TGAACTACCA ACAGAATCCT AGAGACAACT
241TTCTTTCTTT GGAGGACTGC AAAGACATTG AAAATCTGGA GTCTTTCACA GATGTCCTGG
301ATAATGAGGG TGCTTTAACC TCAAACTGGG AACAGTGGGA TACATACTGT GAAGACCTAA
361CGAAATATAC CAAACTAACC AGCTGTGACA TCTGGGGAAC AAAAGAAGTG GATTACTTGG
421GTCTTGATGA CTTTTCTAGT CCTTACCAAG ATGAAGAGGT TATAAGTAAA ACTCCAACTT
481TAGCTCAACT TAATAGTGAG GACTCACAGT CTGTTTCTGA TTCCCTTTAT TACCCCGATT
541CACTTTTCAG TGTCAAACAA AATCCCTTAC CCTCTTCATT CCCTGGTAAA AAGATCACAA
601GCAGAGCAGC TGCTCCTGTG TGTTCTTCTA AGACTCTGCA GGCTGAGGTC CCTTTGTCAG
661ACTGTGTCCA AAAAGCAAGT AAACCCACTT CAAGCACACA AATCATGGTG AAGACCAACA
721TGTATCATAA TGAAAAGGTG AACTTTCATG TTGAATGTAA AGACTATGTA AAAAAGGCAA
781AGGTAAAGAT CAACCCAGTG CAACAGAGCC GGCCCTTGTT GAGCCAGATT CACACAGATG
841CAGCAAAGGA GAACACCTGC TACTGTGGTG CAGTGGCAAA GAGACAAGAG AAAAAAGGGA
901TGGAGCCTCT TCAAGGTCAT GCCACTCCCG CTTTGCCTTT TAAAGAAACC CAGGAACTAT
961TACTAAGTCC CCTGCCCCAG GAAGGTCCTG GGTCACTTGC AGCAGGAGAG AGCAGCAGTC
1021TTTCTGCCAG TACATCAGTC TCAGATTCAT CCCAGAAAAA AGAAGAGCAC AATTATTCTC
1081TTTTTGTCTC CGACAACTTG GGTGAACAGC CAACTAAATG CAGTCCTGAA GAAGATGAGG
1141AGGACGAGGA GGATGTTGAT GATGAGGACC ATGATGAAGG ATTCGGCAGT GAGCATGAAC
1201TGTCTGAAAA TGAGGAGGAG GAAGAAGAGG AAGAGGATTA TGAAGATGAC AAGGATGATG
1261ATATTAGTGA TACTTTCTCT GAACCAGGCT ATGAAAATGA TTCTGTAGAA GACCTGAAGG
1321AGGTGACTTC AATATCTTCA CGGAAGAGAG GTAAAAGAAG ATACTTCTGG GAGTATAGTG
1381AACAACTTAC ACCATCACAG CAAGAGAGGA TGCTGAGACC ATCTGAGTGG AACCGAGATA
1441CTTTGCCAAG TAATATGTAT CAGAAAAATG GCTTACATCA TGGAAAATAT GCAGTAAAGA
1501AGTCACGGAG AGCTGATGTA GAAGACCTGA CTCCAAATCC TAAAAAACTC CTCCAGATAG
1561GCAATGAACT TCGGAAACTG AATAAGGTGA TTAGTGACCT GACTCCAGTC AGTGAGCTTC
1621CCTTAACAGC CCGACCAAGG TCAAGGAAGG AAAAAAATAA GCTGGCTTCC AGAGCTTGTC
1681GGTTAAAGAA GAAAGCCCAG TATGAAGCTA ATAAAGTGAA ATTATGGGGC CTCAACACAG
1741AATATGATAA TTTATTGTTT GTAATCAACT CCATCAAGCA AGAGATTGTA AACCGGGTAC
1801AGAATCCAAG AGATGAGAGA GGACCCAACA TGGGGCAGAA GCTTGAAATC CTCATTAAAG
1861ATACTCTCGG TCTACCAGTT GCTGGGCAAA CCTCAGAATT TGTTAACCAA GTGTTAGAGA
1921AGACTGCAGA AGGGAATCCC ACTGGAGGCC TTGTAGGATT AAGGATACCA ACATCAAAGG
1981TGTACCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt
2041gcaacgaac

Download FASTA (ORF) (Full)