Construct: ORF ccsbBroadEn_09706
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010749.1_s300c1, BRDN0000388199
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAMD3 (154075)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_017010310.2 | 87.4% | 87.1% | (many diffs) |
| 2 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_017010309.2 | 85.4% | 84.1% | (many diffs) |
| 3 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_017010308.2 | 58.5% | 58% | (many diffs) |
| 4 | human | 154075 | SAMD3 | sterile alpha motif domain ... | NM_001017373.4 | 42.1% | 41.7% | (many diffs) |
| 5 | human | 154075 | SAMD3 | sterile alpha motif domain ... | NM_001258275.3 | 42.1% | 41.7% | (many diffs) |
| 6 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_024446334.1 | 42.1% | 41.7% | (many diffs) |
| 7 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_024446335.1 | 42.1% | 41.7% | (many diffs) |
| 8 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_024446336.1 | 42.1% | 41.7% | (many diffs) |
| 9 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_024446337.1 | 42.1% | 41.7% | (many diffs) |
| 10 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_017010307.1 | 41.9% | 41.5% | (many diffs) |
| 11 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_024446333.1 | 40.5% | 40.1% | (many diffs) |
| 12 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XM_017010305.1 | 40.3% | 40% | (many diffs) |
| 13 | human | 154075 | SAMD3 | sterile alpha motif domain ... | NM_001277185.1 | 40.2% | 39.8% | (many diffs) |
| 14 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XR_001743174.2 | 34.6% | (many diffs) | |
| 15 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XR_001743172.2 | 33.9% | (many diffs) | |
| 16 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XR_001743171.2 | 30.8% | (many diffs) | |
| 17 | human | 154075 | SAMD3 | sterile alpha motif domain ... | XR_001743173.2 | 23.8% | (many diffs) | |
| 18 | mouse | 268288 | Samd3 | sterile alpha motif domain ... | NM_001013766.2 | 64% | 61.7% | (many diffs) |
| 19 | mouse | 268288 | Samd3 | sterile alpha motif domain ... | NM_001115154.1 | 34.6% | 33% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 729
- ORF length:
- 663
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AACCTGGTCA GTTGAGCAGG TCTGCAGTTG GTTGGTGGAG AAAAATTTAG 121 GAGAGCTAGT TCATAGATTT CAAGAGGAAG AAGTAAGTGG GGCCGCTCTT CTTGCACTTA 181 ATGATCGGAT GGTTCAGCAA CTGGTAAAGA AAATTGGGCA CCAGGCTGTT CTGATGGATT 241 TAATTAAAAA ATACAAGCAG AACACTCAAG GACTGAAGTC CCCAGAAAAC CCCAAAAAGG 301 CAGCCCTGGT CATGCAAACA GAAGCAGCTC GAGATTACAG GGATAAAGAG TCCTCCAGTC 361 CAGCCAGGCA TGGGGAGCAG ATGCCATCTT TCTATCCAGC TGAAAACCTT GATAATGGAC 421 TAATTGACCA AAGAGTATTG AAACAGAGAA GAAATGTGAA ACAAATTCTA GCAAGAAGCA 481 AAGCATTACA GTGGACGAAG TCCTATGTTT TACCAGAGTT TCCCTATGAT GTCAAATGCA 541 TGTTAGCAGA GCAGAAGTGC CCGGATCACA GCATGAGGAT AAGGATCATT GAGTTTCTCC 601 AGGCCGACAT GACTAAGTAT CTGGAAGGCT CACTGTACCC CAGCACCCAG CAGTACAATG 661 ACGTGGTTAA TGCCCTGCTG CAGGCCCACC CTTTCCTGGA TGAGGATGGC TGTGGCTTCG 721 CTGGAGTATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 781 tttgttgcaa cgaac