Construct: ORF ccsbBroadEn_09706

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010749.1_s300c1, BRDN0000388199
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAMD3 (154075)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 154075 SAMD3 sterile alpha motif domain ... XM_017010310.2 87.4% 87.1% (many diffs)
2 human 154075 SAMD3 sterile alpha motif domain ... XM_017010309.2 85.4% 84.1% (many diffs)
3 human 154075 SAMD3 sterile alpha motif domain ... XM_017010308.2 58.5% 58% (many diffs)
4 human 154075 SAMD3 sterile alpha motif domain ... NM_001017373.4 42.1% 41.7% (many diffs)
5 human 154075 SAMD3 sterile alpha motif domain ... NM_001258275.3 42.1% 41.7% (many diffs)
6 human 154075 SAMD3 sterile alpha motif domain ... XM_024446334.1 42.1% 41.7% (many diffs)
7 human 154075 SAMD3 sterile alpha motif domain ... XM_024446335.1 42.1% 41.7% (many diffs)
8 human 154075 SAMD3 sterile alpha motif domain ... XM_024446336.1 42.1% 41.7% (many diffs)
9 human 154075 SAMD3 sterile alpha motif domain ... XM_024446337.1 42.1% 41.7% (many diffs)
10 human 154075 SAMD3 sterile alpha motif domain ... XM_017010307.1 41.9% 41.5% (many diffs)
11 human 154075 SAMD3 sterile alpha motif domain ... XM_024446333.1 40.5% 40.1% (many diffs)
12 human 154075 SAMD3 sterile alpha motif domain ... XM_017010305.1 40.3% 40% (many diffs)
13 human 154075 SAMD3 sterile alpha motif domain ... NM_001277185.1 40.2% 39.8% (many diffs)
14 human 154075 SAMD3 sterile alpha motif domain ... XR_001743174.2 34.6% (many diffs)
15 human 154075 SAMD3 sterile alpha motif domain ... XR_001743172.2 33.9% (many diffs)
16 human 154075 SAMD3 sterile alpha motif domain ... XR_001743171.2 30.8% (many diffs)
17 human 154075 SAMD3 sterile alpha motif domain ... XR_001743173.2 23.8% (many diffs)
18 mouse 268288 Samd3 sterile alpha motif domain ... NM_001013766.2 64% 61.7% (many diffs)
19 mouse 268288 Samd3 sterile alpha motif domain ... NM_001115154.1 34.6% 33% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
729
ORF length:
663
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AACCTGGTCA GTTGAGCAGG TCTGCAGTTG GTTGGTGGAG AAAAATTTAG
121GAGAGCTAGT TCATAGATTT CAAGAGGAAG AAGTAAGTGG GGCCGCTCTT CTTGCACTTA
181ATGATCGGAT GGTTCAGCAA CTGGTAAAGA AAATTGGGCA CCAGGCTGTT CTGATGGATT
241TAATTAAAAA ATACAAGCAG AACACTCAAG GACTGAAGTC CCCAGAAAAC CCCAAAAAGG
301CAGCCCTGGT CATGCAAACA GAAGCAGCTC GAGATTACAG GGATAAAGAG TCCTCCAGTC
361CAGCCAGGCA TGGGGAGCAG ATGCCATCTT TCTATCCAGC TGAAAACCTT GATAATGGAC
421TAATTGACCA AAGAGTATTG AAACAGAGAA GAAATGTGAA ACAAATTCTA GCAAGAAGCA
481AAGCATTACA GTGGACGAAG TCCTATGTTT TACCAGAGTT TCCCTATGAT GTCAAATGCA
541TGTTAGCAGA GCAGAAGTGC CCGGATCACA GCATGAGGAT AAGGATCATT GAGTTTCTCC
601AGGCCGACAT GACTAAGTAT CTGGAAGGCT CACTGTACCC CAGCACCCAG CAGTACAATG
661ACGTGGTTAA TGCCCTGCTG CAGGCCCACC CTTTCCTGGA TGAGGATGGC TGTGGCTTCG
721CTGGAGTATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
781tttgttgcaa cgaac

Download FASTA (ORF) (Full)