Transcript: Mouse NM_001013766.2

Mus musculus sterile alpha motif domain containing 3 (Samd3), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Samd3 (268288)
Length:
2620
CDS:
131..952

Additional Resources:

NCBI RefSeq record:
NM_001013766.2
NBCI Gene record:
Samd3 (268288)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001013766.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253023 GCCCTCAAAGATCGCTTTAAA pLKO_005 788 CDS 100% 15.000 21.000 N Samd3 n/a
2 TRCN0000267480 ATGGTACAGCAACTGGTAAAG pLKO_005 254 CDS 100% 10.800 15.120 N Samd3 n/a
3 TRCN0000253022 CCTACATCTTACCGGAGTTTC pLKO_005 555 CDS 100% 10.800 15.120 N Samd3 n/a
4 TRCN0000253025 CCCTAAGCAAGACTTATTATT pLKO_005 2131 3UTR 100% 15.000 10.500 N Samd3 n/a
5 TRCN0000253024 CAATAGACTCATTGATCAAAG pLKO_005 466 CDS 100% 10.800 7.560 N Samd3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001013766.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000470354 AAGCATGACCCCTATGGCTCGTTA pLX_317 78.5% 64.4% 25.2% V5 (not translated due to prior stop codon) (many diffs) n/a
2 ccsbBroadEn_09706 pDONR223 100% 64% 61.7% None (many diffs) n/a
3 ccsbBroad304_09706 pLX_304 0% 64% 61.7% V5 (many diffs) n/a
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