Construct: ORF ccsbBroadEn_09752

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010104.1_s300c1, BRDN0000390711
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DENND1B (163486)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 163486 DENND1B DENN domain containing 1B NM_144977.5 99.9% 99.7% 4G>A
2 human 163486 DENND1B DENN domain containing 1B NM_001300858.2 91% 87.1% (many diffs)
3 human 163486 DENND1B DENN domain containing 1B XM_011509251.3 82.4% 79.3% (many diffs)
4 human 163486 DENND1B DENN domain containing 1B NM_001195215.2 54.4% 53% (many diffs)
5 human 163486 DENND1B DENN domain containing 1B XM_011509248.2 53.2% 51.5% (many diffs)
6 human 163486 DENND1B DENN domain containing 1B XM_006711192.2 52.2% 49.2% (many diffs)
7 human 163486 DENND1B DENN domain containing 1B XM_006711193.3 52.2% 49.2% (many diffs)
8 human 163486 DENND1B DENN domain containing 1B XM_011509249.2 52.2% 49.2% (many diffs)
9 human 163486 DENND1B DENN domain containing 1B XM_017000470.1 52.2% 49.2% (many diffs)
10 human 163486 DENND1B DENN domain containing 1B XM_005244931.2 51.8% 50.5% (many diffs)
11 human 163486 DENND1B DENN domain containing 1B XM_011509246.2 51.1% 49.3% (many diffs)
12 human 163486 DENND1B DENN domain containing 1B XM_017000471.1 49.7% 46.7% (many diffs)
13 human 163486 DENND1B DENN domain containing 1B XM_011509247.1 48.7% 46.9% (many diffs)
14 human 163486 DENND1B DENN domain containing 1B XM_024453626.1 28.6% 27.4% (many diffs)
15 human 163486 DENND1B DENN domain containing 1B XM_024453627.1 17.9% 16.7% (many diffs)
16 human 163486 DENND1B DENN domain containing 1B XM_006711194.3 15% 13.8% (many diffs)
17 human 163486 DENND1B DENN domain containing 1B NR_125340.2 14% (many diffs)
18 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529716.3 48.1% 48.9% (many diffs)
19 mouse 329260 Dennd1b DENN/MADD domain containing 1B NM_001166501.1 46% 47% (many diffs)
20 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529717.2 44% 44.7% (many diffs)
21 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529718.2 39.5% 37.9% (many diffs)
22 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529719.2 37.3% 36% (many diffs)
23 mouse 329260 Dennd1b DENN/MADD domain containing 1B NM_181347.3 37.3% 38.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CTGCAGGACC AAGGCAAATC CAGACAGAAC CTTTGACTTG GTGTTGAAAG
121TGAAATGTCA TGCCTCTGAA AATGAAGATC CTGTGGTATT GTGGAAATTC CCAGAGGACT
181TTGGAGACCA GGAAATACTA CAGAGTGTGC CAAAGTTCTG TTTTCCCTTT GACGTTGAAA
241GGGTGTCTCA GAATCAAGTT GGACAGCACT TTACCTTTGT ACTGACAGAC ATTGAAAGTA
301AACAGAGATT TGGATTCTGC AGACTGACGT CAGGAGGCAC AATTTGTTTA TGCATCCTTA
361GTTACCTTCC CTGGTTTGAA GTGTATTACA AGCTTCTAAA TACTCTTGCA GATTACTTGG
421CTAAGGAACT GGAAAATGAT TTGAATGAAA CTCTCAGATC ACTGTATAAC CACCCAGTAC
481CAAAGGCAAA TACTCCTGTA AATTTGAGTG TGAACCAAGA GATATTTATT GCCTGTGAGC
541AAGTTCTGAA AGATCAGCCT GCTCTAGTAC CGCATTCCTA CTTCATTGCC CCTGATGTAA
601CTGGACTCCC AACAATACCC GAGAGTAGAA ATCTTACAGA ATATTTTGTT GCCGTGGATG
661TGAACAACAT GCTGCAGCTG TATGCCAGTA TGCTGCATGA AAGGCGCATC GTGATTATCT
721CGAGCAAATT AAGCACTTTA ACTGCCTGTA TCCATGGATC AGCTGCTCTT CTATACCCAA
781TGTATTGGCA ACACATATAC ATCCCAGTGC TTCCTCCACA CCTGCTGGAC TACTGCTGTG
841CCCCAATGCC ATACCTGATT GGAATACACT CCAGCCTCAT AGAGAGAGTG AAAAACAAAT
901CATTGGAAGA TGTTGTTATG TTAAATGTTG ATACAAACAC ATTAGAATCA CCATTTAGTG
961ACTTGAACAA CCTACCAAGT GATGTGGTCT CGGCCTTGAA AAATAAACTG AAGAAGCAGT
1021CTACAGCTAC GGGTGATGGA GTAGCTAGGG CCTTTCTTAG AGCACAGGCT GCTTTGTTTG
1081GATCCTACAG AGATGCACTG AGATACAAAC CTGGTGAGCC CATCACTTTC TGTGAGGAGA
1141GTTTTGTAAA GCACCGCTCA AGCGTGATGA AACAGTTCCT GGAAACTGCC ATTAACCTCC
1201AGCTTTTTAA GCAGTTTATC GATGGTCGAC TGGCAAAACT AAATGCAGGA AGGGGTTTCT
1261CTGATGTATT TGAAGAAGAG ATCACTTCAG GTGGCTTTTG TGGAGGTAAA GACAAGTTAC
1321AATATGATTA TCCATTTTCT CAATACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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