Construct: ORF ccsbBroadEn_09783

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005587.1_s300c1, BRDN0000393876
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADAMTS18 (170692)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 170692 ADAMTS18 ADAM metallopeptidase with ... NM_199355.4 99.8% 99.7% (many diffs)
2 human 170692 ADAMTS18 ADAM metallopeptidase with ... NM_001326358.2 85.6% 76.9% (many diffs)
3 human 170692 ADAMTS18 ADAM metallopeptidase with ... XM_011522923.1 85.6% 76.9% (many diffs)
4 human 170692 ADAMTS18 ADAM metallopeptidase with ... XM_011522924.2 79.7% 71.3% (many diffs)
5 human 170692 ADAMTS18 ADAM metallopeptidase with ... XM_017022988.2 66.1% 66% (many diffs)
6 human 170692 ADAMTS18 ADAM metallopeptidase with ... XM_017022989.1 66.1% 66% (many diffs)
7 mouse 208936 Adamts18 a disintegrin-like and meta... NM_172466.3 85.3% 88.5% (many diffs)
8 mouse 208936 Adamts18 a disintegrin-like and meta... XM_006530795.4 83% 86.1% (many diffs)
9 mouse 208936 Adamts18 a disintegrin-like and meta... XM_006530797.2 78% 76.8% (many diffs)
10 mouse 208936 Adamts18 a disintegrin-like and meta... XM_006530800.2 73% 70.7% (many diffs)
11 mouse 208936 Adamts18 a disintegrin-like and meta... XM_006530801.3 73% 70.7% (many diffs)
12 mouse 208936 Adamts18 a disintegrin-like and meta... XR_878788.2 63.3% (many diffs)
13 mouse 208936 Adamts18 a disintegrin-like and meta... XM_030243369.1 56.7% 59.7% (many diffs)
14 mouse 208936 Adamts18 a disintegrin-like and meta... XM_030243370.1 56.7% 59.7% (many diffs)
15 mouse 208936 Adamts18 a disintegrin-like and meta... XR_001778415.2 51.2% (many diffs)
16 mouse 208936 Adamts18 a disintegrin-like and meta... XM_017312631.1 49.8% 47.7% (many diffs)
17 mouse 208936 Adamts18 a disintegrin-like and meta... XR_001778416.1 41.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3729
ORF length:
3663
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GTGCGCCCTC CTGCTCGCGT GTGCCTTCCC GGCTGCGGGT TCGGGCCCGC
121CGAGGGGCCT GGCGGGACTG GGGCGCGTGG CCAAGGCGCT CCAGCTGTGC TGCCTCTGCT
181GTGCGTCGGT CGCCGCGGCC TTAGCCAGTG ACAGCAGCAG CGGCGCCAGC GGATTAAATG
241ATGATTACGT CTTTGTCACG CCAGTAGAAG TAGACTCAGC CGGGTCATAT ATTTCACACG
301ACATTTTGCA CAACGGCAGG AAAAAGCGAT CGGCGCAGAA TGCCAGAAGC TCCCTGCACT
361ACCGATTTTC AGCATTTGGA CAGGAACTGC ACTTAGAACT TAAGCCCTCG GCGATTTTGA
421GCAGTCACTT TATTGTCCAG GTACTTGGAA AAGATGGTGC TTCAGAGACT CAGAAACCCG
481AGGTGCAGCA ATGCTTCTAT CAGGGATTTA TCAGAAATGA CAGCTCCTCC TCTGTCGCTG
541TGTCTACGTG TGCTGGCTTG TCAGGTTTAA TAAGGACACG AAAAAATGAA TTCCTCATCT
601CGCCATTACC TCAGCTTCTG GCCCAGGAAC ACAACCACAG CTCCCCTGCG GGTCACCATC
661CTCACGTACT GTACAAAAGG ACAGCAGAGG AGAAGATCCA GCGGTACCGT GGCTACCCCG
721GCTCTGGCCG GAATTATCCT GGTTACTCCC CAAGTCACAT TCCCCATGCA TCTCAGAGTC
781GAGAGACAGA GTATCACCAT CGAAGGTTGC AAAAGCAGCA TTTTTGTGGA CGACGCAAGA
841AATATGCTCC CAAGCCTCCC ACAGAGGACA CCTATCTAAG GTTTGATGAA TATGGGAGCT
901CTGGGCGACC CAGAAGATCA GCTGGAAAAT CACAAAAGGG CCTCAATGTG GAAACCCTCG
961TGGTGGCAGA CAAGAAAATG GTGGAAAAGC ATGGCAAGGG AAATGTCACC ACATACATTC
1021TCACAGTAAT GAACATGGTT TCTGGCCTAT TTAAAGATGG GACTATTGGA AGTGACATAA
1081ACGTGGTTGT GGTGAGCCTA ATTCTTCTGG AACAAGAACC TGGAGGATTA TTGATCAACC
1141ATCATGCAGA CCAGTCTCTG AATAGTTTTT GTCAATGGCA GTCTGCCCTC ATTGGAAAGA
1201ATGGCAAGAG ACATGATCAT GCCATCTTAC TAACAGGATT TGATATTTGT TCTTGGAAGA
1261ATGAACCATG TGACACTCTA GGGTTTGCCC CCATCAGTGG AATGTGCTCT AAGTACCGAA
1321GTTGTACCAT CAATGAGGAC ACAGGACTTG GCCTTGCCTT CACCATCGCT CATGAGTCAG
1381GGCACAACTT TGGTATGATT CACGACGGAG AAGGGAATCC CTGCAGAAAG GCTGAAGGCA
1441ATATCATGTC TCCCACACTG ACCGGAAACA ATGGAGTGTT TTCATGGTCT TCCTGCAGCC
1501GCCAGTATCT CAAGAAATTC CTCAGCACAC CTCAGGCGGG GTGTCTAGTG GATGAGCCCA
1561AGCAAGCAGG ACAGTATAAA TATCCGGACA AACTACCAGG ACAGATTTAT GATGCTGACA
1621CACAGTGTAA ATGGCAATTT GGAGCAAAAG CCAAGTTATG CAGCCTTGGT TTTGTGAAGG
1681ATATTTGCAA ATCACTTTGG TGCCACCGAG TAGGCCACAG GTGTGAGACC AAGTTTATGC
1741CCGCAGCAGA AGGGACCGTT TGTGGCTTGA GTATGTGGTG TCGGCAAGGC CAGTGCGTAA
1801AGTTTGGGGA GCTCGGGCCC CGGCCCATCC ACGGCCAGTG GTCCGCCTGG TCGAAGTGGT
1861CAGAATGTTC CCGGACATGT GGTGGAGGAG TCAAGTTCCA GGAGAGACAC TGCAATAACC
1921CCAAGCCTCA GTATGGTGGC ATATTCTGTC CAGGTTCTAG CCGTATTTAT CAGCTGTGCA
1981ATATTAACCC TTGCAATGAA AATAGCTTGG ATTTTCGGGC TCAACAGTGT GCAGAATATA
2041ACAGCAAACC TTTCCGTGGA TGGTTCTACC AGTGGAAACC CTATACAAAA GTGGAAGAGG
2101AAGATCGATG CAAACTGTAC TGCAAGGCTG AGAACTTTGA ATTTTTTTTT GCAATGTCCG
2161GCAAAGTGAA AGATGGAACT CCCTGCTCCC CAAACAAAAA TGATGTTTGT ATTGACGGGG
2221TTTGTGAACT AGTGGGATGT GATCATGAAC TAGGCTCTAA AGCAGTTTCA GATGCTTGTG
2281GCGTTTGCAA AGGTGATAAT TCAACTTGCA AGTTTTATAA AGGCCTGTAC CTCAACCAGC
2341ATAAAGCAAA TGAATATTAT CCGGTGGTCA TCATTCCAGC TGGCGCCCGA AGCATCGAAA
2401TCCAGGAGCT GCAGGTTTCC TCCAGTTACC TCGCAGTTCG AAGCCTCAGT CAAAAGTATT
2461ACCTCACCGG GGGCTGGAGC ATCGACTGGC CTGGGGAGTT CCCCTTCGCT GGGACCACGT
2521TTGAATACCA GCGCTCTTTC AACCGCCCGG AACGTCTGTA CGCGCCAGGG CCCACAAATG
2581AGACGCTGGT CTTTGAAATT CTGATGCAAG GCAAAAATCC AGGGATAGCT TGGAAGTATG
2641CACTTCCCAA GGTCATGAAT GGAACTCCAC CAGCCACAAA AAGACCTGCC TATACCTGGA
2701GTATCGTGCA GTCAGAGTGC TCCGTCTCCT GTGGTGGAGG TTACATAAAT GTAAAGGCCA
2761TTTGCTTGCG AGATCAAAAT ACTCAAGTCA ATTCCTCATT CTGCAGTGCA AAAACCAAGC
2821CAGTAACTGA GCCCAAAATC TGCAACGCTT TCTCCTGCCC GGCTTACTGG ATGCCAGGTG
2881AATGGAGTAC ATGCAGCAAG GCCTGTGCTG GAGGCCAGCA GAGCCGAAAG ATCCAGTGTG
2941TGCAAAAGAA GCCCTTCCAA AAGGAGGAAG CAGTGTTGCA TTCTCTCTGT CCAGTGAGCA
3001CACCCACTCA GGTCCAAGCC TGCAACAGCC ATGCCTGCCC TCCACAATGG AGCCTTGGAC
3061CCTGGTCTCA GTGTTCCAAG ACCTGTGGAC GAGGGGTGAG GAAGCGTGAA CTCCTCTGCA
3121AGGGCTCTGC CGCAGAAACC CTCCCCGAGA GCCAGTGTAC CAGTCTCCCC AGACCTGAGC
3181TGCAGGAGGG CTGTGTGCTT GGACGATGCC CCAAGAACAG CCGGCTACAG TGGGTCGCTT
3241CTTCGTGGAG CGAGTGTTCT GCAACCTGTG GTTTGGGTGT GAGGAAGAGG GAGATGAAGT
3301GCAGCGAGAA GGGCTTCCAG GGAAAGCTGA TAACTTTCCC AGAGCGAAGA TGCCGTAATA
3361TTAAGAAACC AAATCTGGAC TTGGAAGAGA CCTGCAACCG ACGGGCTTGC CCAGCCCATC
3421CAGTGTACAA CATGGTAGCT GGATGGTATT CATTGCCGTG GCAGCAGTGC ACAGTCACCT
3481GTGGGGGAGG GGTCCAGACC CGGTCAGTCC ACTGTGTTCA GCAAGGCCGG CCTTCCTCAA
3541GTTGTCTGCT CCATCAGAAA CCTCCGGTGC TACGAGCCTG TAATACAAAC TTCTGTCCAG
3601CTCCTGAAAA GAGAGAGGAT CCATCCTGCG TAGATTTCTT CAACTGGTGT CACCTAGTTC
3661CTCAGCATGG TGTCTGCAAC CACAAGTTTT ACGGAAAACA ATGCTGCAAG TCATGCACAA
3721GGAAGATCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3781tttgttgcaa cgaac

Download FASTA (ORF) (Full)