Transcript: Human XM_017022988.2

PREDICTED: Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 18 (ADAMTS18), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ADAMTS18 (170692)
Length:
5136
CDS:
879..3308

Additional Resources:

NCBI RefSeq record:
XM_017022988.2
NBCI Gene record:
ADAMTS18 (170692)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017022988.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371177 GAGCGAAGATGCCGTAATATT pLKO_005 2919 CDS 100% 15.000 21.000 N ADAMTS18 n/a
2 TRCN0000377638 GGATCCATCCTGCGTAGATTT pLKO_005 3194 CDS 100% 13.200 18.480 N ADAMTS18 n/a
3 TRCN0000046867 GCCATTTGCTTGCGAGATCAA pLKO.1 2334 CDS 100% 4.950 6.930 N ADAMTS18 n/a
4 TRCN0000046863 GCCGCCAGTATCTCAAGAAAT pLKO.1 1075 CDS 100% 13.200 9.240 N ADAMTS18 n/a
5 TRCN0000046866 CCAGCATAAAGCAAATGAATA pLKO.1 1913 CDS 100% 13.200 7.920 N ADAMTS18 n/a
6 TRCN0000031643 CCACGTTTGAATACCAGCGTT pLKO.1 2092 CDS 100% 2.640 3.696 N Adamts18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017022988.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09783 pDONR223 100% 66.1% 66% None (many diffs) n/a
2 ccsbBroad304_09783 pLX_304 0% 66.1% 66% V5 (many diffs) n/a
3 TRCN0000470889 TGCTCACCGTACAGGGACGCAGAC pLX_317 13.6% 66.1% 66% V5 (many diffs) n/a
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