Construct: ORF ccsbBroadEn_09833

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011822.1_s300c1, BRDN0000396820
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SENP5 (205564)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 205564 SENP5 SUMO specific peptidase 5 NM_152699.5 99.9% 99.8% 224C>A
2 human 205564 SENP5 SUMO specific peptidase 5 XM_011512544.3 99.9% 99.8% 224C>A
3 human 205564 SENP5 SUMO specific peptidase 5 XM_005269310.3 96.2% 96.1% 224C>A;2020_2021ins84
4 human 205564 SENP5 SUMO specific peptidase 5 NM_001308045.1 93.8% 93.7% 224C>A;1882_1883ins138
5 mouse 320213 Senp5 SUMO/sentrin specific pepti... NM_177103.4 86.7% 81.7% (many diffs)
6 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_006522238.3 86.7% 81.7% (many diffs)
7 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_006522239.3 86.7% 81.7% (many diffs)
8 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_011245933.2 86.7% 81.7% (many diffs)
9 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_006522240.3 83.6% 78.3% (many diffs)
10 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_006522242.3 81.1% 75.7% (many diffs)
11 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_017317035.1 76.7% 71.1% (many diffs)
12 mouse 320213 Senp5 SUMO/sentrin specific pepti... XM_006522243.3 71.2% 65% (many diffs)
13 mouse 320213 Senp5 SUMO/sentrin specific pepti... XR_875823.2 67.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2331
ORF length:
2265
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA AAAACAGAGG AAAATTCTAT GGAGGAAAGG AATCCACTTA GCCTTTTCTG
121AGAAATGGAA TACTGGGTTT GGAGGCTTTA AGAAGTTTTA TTTTCACCAA CACTTGTGCA
181TTCTGAAAGC TAAGCTGGGA AGGCCAGTTA CTTGGAATAG ACAGTTGAGA CATTTCCAGG
241GTAGAAAGAA AGCTCTTCAA ATCCAGAAAA CGTGGATCAA GGATGAACAC CTTTGTGCTA
301AGACCAAGTT CAATGTGGCT ACTCAAAATG TTAGTACTTT GTCCTCTAAA GTGAAAAGAA
361AGGACGCTAA ACACTTCATT TCCTCCTCAA AGACTCTCCT GAGACTCCAA GCAGAGAAGC
421TGTTGTCATC AGCAAAGAAT TCTGACCATG AATACTGCAG AGAGAAAAAT CTCTTGAAGG
481CAGTTACTGA CTTTCCATCA AATAGTGCTT TAGGTCAGGC CAATGGTCAC AGACCTAGGA
541CAGACCCACA ACCTTCTGAC TTTCCCATGA AGTTCAATGG GGAGAGCCAA AGTCCAGGTG
601AGAGTGGCAC GATTGTGGTC ACCTTGAACA ACCATAAGAG AAAGGGCTTT TGTTACGGCT
661GCTGCCAAGG GCCGGAGCAC CACAGGAATG GGGGACCCTT GATTCCAAAA AAGTTCCAAC
721TTAACCAACA TAGAAGGATA AAATTATCTC CTCTTATGAT GTATGAGAAA TTATCCATGA
781TTAGATTTCG GTACAGGATT CTCAGATCCC AGCACTTCAG AACCAAAAGC AAGGTTTGCA
841AGCTAAGAAA AGCCCAGCGA AGCTGGGTAC AGAAAGTCAC TGGGGACCAT CAAGAGACCC
901GTAGGGAGAA CGGTGAGGGT GGCAGTTGCA GCCCATTTCC TTCCCCAGAA CCTAAAGACC
961CTTCTTGTCG GCATCAGCCG TACTTTCCAG ATATGGACAG CAGTGCTGTG GTGAAGGGGA
1021CGAACTCTCA TGTGCCTGAT TGCCACACTA AAGGAAGCTC TTTCTTGGGC AAGGAGCTTA
1081GTTTAGACGA AGCATTCCCT GACCAACAGA ATGGCAGTGC CACAAACGCC TGGGACCAGT
1141CATCCTGTTC TTCTCCTAAG TGGGAGTGTA CAGAGCTGAT TCATGACATC CCCTTACCAG
1201AACATCGTTC TAATACCATG TTCATTTCAG AAACTGAAAG AGAAATTATG ACTCTGGGTC
1261AGGAAAATCA GACAAGTTCT GTCAGTGATG ACAGAGTAAA ACTGTCAGTG TCTGGAGCAG
1321ATACATCTGT GAGTAGCGTA GATGGGCCTG TGTCCCAAAA GGCTGTTCAA AATGAGAACT
1381CATACCAGAT GGAGGAGGAT GGATCTCTCA AGCAGAGCAT TCTTAGTTCT GAGTTGCTGG
1441ACCACCCTTA CTGTAAAAGT CCACTGGAGG CTCCCTTGGT GTGCAGTGGA CTCAAACTAG
1501AAAATCAAGT AGGAGGTGGA AAGAACAGTC AGAAAGCCTC TCCAGTGGAT GATGAACAGC
1561TGTCAGTCTG TCTTTCTGGA TTCCTAGATG AGGTTATGAA GAAGTATGGC AGTTTGGTTC
1621CACTCAGTGA AAAAGAAGTC CTTGGAAGAT TAAAAGATGT CTTTAATGAA GACTTTTCTA
1681ATAGAAAACC ATTTATCAAT AGGGAAATAA CAAACTATCG GGCCAGACAT CAAAAATGTA
1741ACTTCCGTAT CTTCTATAAT AAACACATGC TGGATATGGA CGACCTGGCG ACTCTGGATG
1801GTCAGAACTG GCTGAATGAC CAGGTCATTA ATATGTATGG TGAGCTGATA ATGGATGCAG
1861TCCCAGACAA AGTTCACTTC TTCAACAGCT TTTTTCATAG ACAGCTGGTA ACCAAAGGAT
1921ATAATGGAGT AAAAAGATGG ACTAAAAAGG TGGATTTGTT TAAAAAGAGT CTTCTGTTGA
1981TTCCTATTCA CCTGGAAGTC CACTGGTCTC TCATTACTGT GACACTCTCT AATCGAATTA
2041TTTCATTTTA TGATTCCCAA GGCATTCATT TTAAGTTTTG TGTAGAGAAT ATAAGAAAGT
2101ATTTGCTGAC TGAAGCCAGA GAAAAAAATA GACCTGAATT TCTTCAGGGT TGGCAGACTG
2161CTGTTACGAA GTGTATTCCA CAACAGAAAA ACGACAGTGA CTGTGGAGTC TTTGTGCTCC
2221AGTACTGCAA GTGCCTCGCC TTAGAGCAGC CTTTCCAGTT TTCACAAGAA GACATGCCCC
2281GAGTGCGGAA GAGGATTTAC AAGGAGCTAT GTGAGTGCCG GCTCATGGAC TGCCCAACTT
2341TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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