Transcript: Human XM_011512544.3

PREDICTED: Homo sapiens SUMO specific peptidase 5 (SENP5), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SENP5 (205564)
Length:
3325
CDS:
306..2573

Additional Resources:

NCBI RefSeq record:
XM_011512544.3
NBCI Gene record:
SENP5 (205564)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512544.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000294465 GACACTCTCTAATCGAATTAT pLKO_005 2261 CDS 100% 15.000 21.000 N SENP5 n/a
2 TRCN0000062311 CCTTACCAGAACATCGTTCTA pLKO.1 1432 CDS 100% 4.950 6.930 N SENP5 n/a
3 TRCN0000287080 CCTTACCAGAACATCGTTCTA pLKO_005 1432 CDS 100% 4.950 6.930 N SENP5 n/a
4 TRCN0000062312 GACTGCTGTTACGAAGTGTAT pLKO.1 2396 CDS 100% 4.950 6.930 N SENP5 n/a
5 TRCN0000294464 CTTCCGTATCTTCTATAATAA pLKO_005 1982 CDS 100% 15.000 12.000 N SENP5 n/a
6 TRCN0000294413 CACTATTGTTACCTCAAATTT pLKO_005 2687 3UTR 100% 15.000 10.500 N SENP5 n/a
7 TRCN0000062309 CCAAAGGATATAATGGAGTAA pLKO.1 2152 CDS 100% 4.950 3.465 N SENP5 n/a
8 TRCN0000062310 CCAACACTTGTGCATTCTGAA pLKO.1 407 CDS 100% 4.950 3.465 N SENP5 n/a
9 TRCN0000287079 CCAACACTTGTGCATTCTGAA pLKO_005 407 CDS 100% 4.950 3.465 N SENP5 n/a
10 TRCN0000062308 CCTCTTATGATGTATGAGAAA pLKO.1 990 CDS 100% 4.950 3.465 N SENP5 n/a
11 TRCN0000031029 CCATGATTAGATTTCGGTATA pLKO.1 1015 CDS 100% 10.800 7.560 N Senp5 n/a
12 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 224 5UTR 100% 4.950 2.475 Y C16orf89 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512544.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09833 pDONR223 100% 99.9% 99.8% None 224C>A n/a
2 ccsbBroad304_09833 pLX_304 0% 99.9% 99.8% V5 224C>A n/a
3 TRCN0000481654 GCAGAATGGCCTTGGGGTCATGGG pLX_317 23.6% 99.9% 99.8% V5 224C>A n/a
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