Construct: ORF ccsbBroadEn_09843
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006694.1_s300c1, BRDN0000393343
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC3 (219681)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219681 | ARMC3 | armadillo repeat containing 3 | NM_173081.5 | 99.9% | 99.8% | 1877G>A |
| 2 | human | 219681 | ARMC3 | armadillo repeat containing 3 | NM_001282745.2 | 99.1% | 98.9% | 1877G>A;1928_1929ins21 |
| 3 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_005252380.3 | 92.5% | 92.4% | 535_536ins195;1682G>A |
| 4 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_017015831.2 | 91.7% | 91.5% | 535_536ins195;1682G>A;1733_1734ins21 |
| 5 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_005252381.2 | 89.8% | 89.7% | 0_1ins264;1613G>A |
| 6 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_011519350.3 | 78.1% | 78% | 1877G>A;2046_2047ins570 |
| 7 | human | 219681 | ARMC3 | armadillo repeat containing 3 | NM_001282746.2 | 77.7% | 77.9% | 1877G>A;2046_2062del;2064_2065ins569 |
| 8 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_017015832.2 | 76.9% | 77% | (many diffs) |
| 9 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_017015833.2 | 70.3% | 70.5% | (many diffs) |
| 10 | human | 219681 | ARMC3 | armadillo repeat containing 3 | NM_001282747.1 | 69.8% | 69.7% | 0_1ins789;1088G>A |
| 11 | human | 219681 | ARMC3 | armadillo repeat containing 3 | XM_011519351.2 | 51.3% | 51.2% | 0_1ins1272;605G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2682
- ORF length:
- 2616
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TAAAAAGATA AAGAAGGAAG TAGAGCCTCC TCCTAAGGAT GTGTTTGACC 121 CATTAATGAT TGAAAGCAAA AAAGCAGCAA CTGTGGTGTT AATGCTTAAT TCTCCAGAAG 181 AGGAAATTTT GGCTAAAGCA TGTGAAGCCA TTTATAAATT TGCTTTAAAA GGTGAGGAAA 241 ATAAAACAAC CCTCCTTGAA CTTGGAGCTG TGGAACCTTT AACTAAGCTA CTCACCCATG 301 AAGACAAAAT TGTAAGAAGA AATGCTACTA TGATATTTGG AATCCTGGCT TCTAATAATG 361 ATGTTAAAAA ATTGTTAAGG GAGTTAGATG TCATGAATTC TGTCATTGCC CAGCTCGCTC 421 CAGAAGAAGA AGTAGTTATC CATGAGTTTG CTAGTCTTTG TCTAGCAAAC ATGTCTGCAG 481 AGTACACCAG TAAAGTGCAA ATATTTGAAC ATGGGGGATT AGAGCCACTC ATCAGACTAC 541 TGAGTAGCCC TGACCCGGAT GTAAAGAAGA ACTCTATGGA ATGCATTTAC AACTTGGTGC 601 AGGATTTTCA GTGTCGAGCT AAACTTCAAG AACTAAATGC AATACCTCCT ATCTTAGATC 661 TCTTGAAGTC AGAATATCCA GTGATTCAGT TGTTGGCTCT CAAAACCTTA GGTGTTATTG 721 CAAATGATAA GGAGTCTCGA ACAATGCTAA GAGACAATCA AGGATTGGAC CATCTTATTA 781 AGATCCTAGA AACTAAGGAA TTGAATGACC TTCATATAGA AGCACTTGCA GTGATAGCCA 841 ATTGCCTTGA AGACATGGAT ACTATGGTGC AGATTCAGCA GACAGGGGGT CTTAAAAAGC 901 TCCTGTCATT TGCAGAAAAC TCTACAATTC CTGATATTCA GAAGAATGCA GCAAAAGCCA 961 TTACTAAAGC AGCTTATGAT CCTGAAAATA GAAAACTTTT TCATGAACAA GAGGTTGAAA 1021 AGTGCCTTGT AGCCCTTTTG GGTTCTGAAA ATGATGGAAC TAAAATTGCT GCTTCCCAAG 1081 CTATTTCAGC AATGTGTGAG AATTCAGGCA GCAAAGATTT TTTCAATAAT CAGGGGATTC 1141 CACAGTTAAT TCAGTTGCTA AAAAGTGACA ATGAAGAGGT ACGGGAAGCA GCAGCTCTAG 1201 CCCTGGCAAA CCTAACCACT TGCAACCCTG CTAATGCAAA CGCTGCTGCT GAAGCTGATG 1261 GTATTGATCC ATTAATAAAC CTCCTGTCTA GTAAACGAGA TGGAGCCATT GCCAACGCTG 1321 CTACAGTATT AACAAACATG GCCATGCAGG AGCCCCTGCG CCTGAACATA CAGAATCACG 1381 ACATCATGCA TGCCATCATC AGCCCACTGC GTTCTGCAAA CACAGTCGTG CAGAGCAAAG 1441 CTGCTCTCGC TGTCACCGCA ACTGCGTGTG ACGTTGAAGC CCGGACTGAG TTAAGAAATT 1501 CTGGTGGATT GGAGCCCCTG GTAGAGCTGC TACGCTCCAA GAATGATGAA GTGAGGAAGC 1561 ACGCCAGTTG GGCAGTGATG GTCTGTGCTG GTGACGAGCT GACGGCCAAT GAATTATGCA 1621 GGCTCGGGGC TTTAGATATC CTTGAAGAAG TTAACGTATC AGGAACTCGG AAAAATAAAT 1681 TCAGTGAGGC AGCTTATAAT AAGTTGCTCA ATAACAATCT TTCCCTGAAA TACAGCCAGA 1741 CTGGCTATTT GTCATCAAGT AACATAATTA ACGATGGATT CTATGATTAT GGTCGGATAA 1801 ATCCCGGCAC CAAACTGTTG CCTTTGAAGG AGCTCTGCTT ACAAGAACCA AGTGACCTAC 1861 GGGCTGTACT CTTAATCAAC AGTAAATCTT ACGTTTCTCC ACCTTCATCT ATGGAAGATA 1921 AATCAGATGT TGGTTATGGA CAAAGTATTT CTTCTTCATC TTCCTTAAGA AGATCAAGTA 1981 AAGAAAAGAA CAAAAAAAAT AGTTATCATT TTAGTGCTGG ATTTGGATCT CCCATAGAAG 2041 ACAAATCAGA GCCAGCTTCT GGACGAAATA CTGTTCTCAG CAAAAGCGCC ACCAAAGAAA 2101 AAGGATGGAG GAAAAGCAAA GGAAAAAAAG AAGAGGAAAA AGTGAAAGAG GAGGAAGAGG 2161 TTATGGTGGT ACCAAAATTT GTTGGTGAAG GAAGCTCTGA CAAAGAATGG TGTCCTCCCT 2221 CTGACCCTGA TTTCTCTATG TATGTGTATG AGGTGACCAA ATCAATACTG CCAATAACCA 2281 ATATTAAGGA ACAGATTGAG GATCTGGCAA AGTATGTAGC AGAAAAAATG GGTGGTAAGA 2341 TTCCAAAAGA GAAACTACCT GATTTCAGCT GGGAACTTCA CATAAGTGAA CTGAAATTTC 2401 AACTTAAATC CAATGTTATA CCGATTGGAC ATGTCAAAAA AGGAATCTTC TACCATCGAG 2461 CTTTGCTTTT CAAGGCTCTG GCTGATAGAA TTGGCATTGG TTGCTCCCTA GTTCGCGGAG 2521 AGTACGGTAG AGCGTGGAAT GAAGTCATGC TGCAGAATGA CTCTCGGAAG GGAGTGATTG 2581 GGGGCCTCCC CGCTCCTGAG ATGTACGTGA TTGACCTCAT GTTCCATCCA GGTGGACTGA 2641 TGAAGTTGAG AAGTCGAGAG GCTGATCTTT ACAGATTCAT TTACCCAACT TTCTTGTACA 2701 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac