Transcript: Human XM_011519350.3

PREDICTED: Homo sapiens armadillo repeat containing 3 (ARMC3), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARMC3 (219681)
Length:
2217
CDS:
81..2129

Additional Resources:

NCBI RefSeq record:
XM_011519350.3
NBCI Gene record:
ARMC3 (219681)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011519350.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422068 TATGATTATGGTCGGATAAAT pLKO_005 1797 CDS 100% 15.000 21.000 N ARMC3 n/a
2 TRCN0000165876 GCCCGGACTGAGTTAAGAAAT pLKO.1 1494 CDS 100% 13.200 18.480 N ARMC3 n/a
3 TRCN0000165331 GCACTTGCAGTGATAGCCAAT pLKO.1 837 CDS 100% 4.050 5.670 N ARMC3 n/a
4 TRCN0000433672 GTTGGTTATGGACGAAGTATT pLKO_005 1944 CDS 100% 13.200 10.560 N ARMC3 n/a
5 TRCN0000160509 CCCATTAATGATTGAAAGCAA pLKO.1 134 CDS 100% 3.000 2.400 N ARMC3 n/a
6 TRCN0000427095 AGGATGTGTTTGACCCATTAA pLKO_005 121 CDS 100% 13.200 9.240 N ARMC3 n/a
7 TRCN0000160546 CTGATGGTATTGATCCATTAA pLKO.1 1270 CDS 100% 13.200 9.240 N ARMC3 n/a
8 TRCN0000160619 CACCTTCATCTATGGAAGATA pLKO.1 1915 CDS 100% 5.625 3.938 N ARMC3 n/a
9 TRCN0000159099 GCTAAGAGACAATCAAGGATT pLKO.1 761 CDS 100% 4.950 3.465 N ARMC3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011519350.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09843 pDONR223 100% 78.1% 78% None 1877G>A;2046_2047ins570 n/a
2 ccsbBroad304_09843 pLX_304 0% 78.1% 78% V5 1877G>A;2046_2047ins570 n/a
3 TRCN0000470583 TCGGTCATTCCGGCTCTTCTCATG pLX_317 18.2% 78.1% 78% V5 1877G>A;2046_2047ins570 n/a
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