Construct: ORF ccsbBroadEn_09884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011531.1_s300c1, BRDN0000396212
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LHFPL5 (222662)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 222662 LHFPL5 LHFPL tetraspan subfamily m... NM_182548.4 99.8% 100% 648C>A
2 mouse 328789 Lhfpl5 lipoma HMGIC fusion partner... NM_026571.2 89.4% 98.1% (many diffs)
3 mouse 328789 Lhfpl5 lipoma HMGIC fusion partner... XM_006524433.3 77.5% 85.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
723
ORF length:
657
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GAAATTGCTG CCGGCCCAGG AGGCAGCCAA GATCTACCAT ACCAACTATG
121TGCGGAACTC GCGAGCCGTG GGCGTGATGT GGGGTACCCT CACCATCTGC TTCTCCGTAC
181TGGTCATGGC CCTCTTCATC CAGCCCTACT GGATCGGCGA CAGCGTCAAC ACACCGCAGG
241CAGGCTACTT CGGCCTTTTC TCCTACTGCG TGGGTAACGT GCTGTCCTCC GAGCTCATCT
301GCAAGGGCGG CCCCCTAGAC TTCTCCTCCA TCCCCTCTAG AGCCTTCAAG ACTGCCATGT
361TCTTTGTGGC CTTGGGCATG TTCCTCATCA TTGGCTCCAT CATCTGCTTC AGCCTGTTCT
421TCATCTGCAA CACGGCCACA GTCTATAAGA TCTGTGCATG GATGCAGCTG GCTGCGGCCA
481CAGGCCTAAT GATTGGCTGC CTGGTCTACC CTGATGGTTG GGACTCAAGT GAGGTGCGGC
541GCATGTGTGG GGAGCAGACG GGCAAGTACA CGCTGGGCCA CTGCACCATC CGCTGGGCCT
601TCATGCTGGC CATCCTCAGC ATTGGCGACG CCCTCATCCT CTCCTTCCTG GCCTTCGTGT
661TGGGCTACCG GCAGGACAAG CTCCTCCCTG ACGACTACAA GGCAGATGGA ACAGAGGAGG
721TGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
781gcaacgaac

Download FASTA (ORF) (Full)