Construct: ORF ccsbBroadEn_09894

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008202.1_s300c1, BRDN0000457322
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD18A (253650)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 253650 ANKRD18A ankyrin repeat domain 18A NM_147195.4 99.8% 99.5% (many diffs)
2 human 253650 ANKRD18A ankyrin repeat domain 18A XM_011517839.3 99.8% 99.5% (many diffs)
3 human 253650 ANKRD18A ankyrin repeat domain 18A XM_024447482.1 93.8% 93.6% (many diffs)
4 human 253650 ANKRD18A ankyrin repeat domain 18A NM_001331100.2 93.7% 93.5% (many diffs)
5 human 253650 ANKRD18A ankyrin repeat domain 18A XM_017014576.2 93.7% 93.5% (many diffs)
6 human 253650 ANKRD18A ankyrin repeat domain 18A XM_024447481.1 88.5% 88% (many diffs)
7 human 253650 ANKRD18A ankyrin repeat domain 18A XM_024447480.1 87.9% 87.4% (many diffs)
8 human 253650 ANKRD18A ankyrin repeat domain 18A XM_024447479.1 87.8% 87.4% (many diffs)
9 human 253650 ANKRD18A ankyrin repeat domain 18A XM_024447483.1 84.6% 84.1% (many diffs)
10 human 441459 ANKRD18B ankyrin repeat domain 18B NM_001353432.2 81.1% 78% (many diffs)
11 human 101926917 ANKRD18CP ankyrin repeat domain 18C, ... NR_136286.1 65.3% (many diffs)
12 human 253650 ANKRD18A ankyrin repeat domain 18A XM_017014577.1 60.1% 59.2% (many diffs)
13 human 112267916 LOC112267916 uncharacterized LOC112267916 XR_002958867.1 24% (many diffs)
14 human 105379272 LOC105379272 uncharacterized LOC105379272 XR_949087.2 20.8% (many diffs)
15 human 101927345 LOC101927345 putative ankyrin repeat dom... XR_001754943.2 17.2% (many diffs)
16 human 101927345 LOC101927345 putative ankyrin repeat dom... XR_002958650.1 15.9% (many diffs)
17 human 112267916 LOC112267916 uncharacterized LOC112267916 XR_002958868.1 13.6% (many diffs)
18 human 107984150 LOC107984150 uncharacterized LOC107984150 XR_001756161.1 11.9% (many diffs)
19 human 101927345 LOC101927345 putative ankyrin repeat dom... XM_011544009.2 10.6% 8.8% (many diffs)
20 human 101059949 LOC101059949 putative ankyrin repeat dom... XM_017030105.2 10.6% 8.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3045
ORF length:
2976
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGAAGCTC TTCAGCTTCG GGAGACGCCT GGGCCAGGCG CTCCTGAGCT
121CCATGGACCA AGAGTATGCG GGTCCGGGTT ACGACATTCG GGACTGGGAA CTGCGGAAGA
181TCCACAGGGC TGCCATCAAG GGCGACGCCG CGGAGGTGGA GCGCTGCCTG ACGCGCAGGT
241TCCGGGACTT GGACGCCCGC GACAGAAAAG ACAGGACTGT TCTACATTTG GCCTGTGCCC
301ATGGCCGTGT GCAAGTGGTC ACTCTCTTGC TGCACAGAAG ATGCCAGATC GACATCTGTG
361ACAGACTAAA CAGGACACCT TTAATGAAGG CTGTACACAG CCAGGAAGAG GCTTGTGCCA
421TCGTTCTCCT GGAATGTGGC GCCAATCCAA ACATTAAGGA TATCTACGGC AACACTGCTC
481TCCATTATGC CGTGTATAAT AAGGGGACTT CACTGGCAGA AAGACTGCTT TCCCACCATG
541CAAATATTGA AGCACTAAAC AAGGAGGGAA ACACTCCACT TTTGTTTGCT ATAAATTCCA
601GGAGACAGCA TATGGTGGAA TTTTTATTGA AGAACCAGGC AAATATACAT GCCGTTGACA
661ATTTCAAAAG AACAGCCCTC ATACTTGCAG TACAGCATAA CTTGTCAAGT ATCGTCACCC
721TCCTGCTTCA ACAAAATATA CGTATCTCTT CTCAAGACAT GTTTGGCCAA ACTGCCGAGG
781ATTATGCTCT TTGTTCTGAT TTGAGAAGCA TCCGACAACA AATTTTGGAA CATAAAAATA
841AAATGCTTAA AAATCATCTT CGAAATGACA ATCAAGAAAC AGCAGCTATG AAGCCTGCAA
901ATTTGAAAAA AAGAAAAGAA CGTGCAAAAG CAGAACACAA CCTAAAAGTG GCTTCAGAGG
961AAAAGCAAGA AAGGCTCCAA AGAAGTGAAA ATAAACAGCC ACAGGATTCT CAAAGTTACG
1021GAAAAAAGAA GGATGCGATG TATGGAAATT TTATGTTGAA GAAAGACATT GCCATGCTCA
1081AAGAGGAATT ATATGCAATA AAAAATGACA GTCTCAGAAA GGAAAAGAAA TATATTCAGG
1141AAATTAAAAG CATTACAGAA ATAAATGCTA ACTTTGAAAA GAGTGTAAGA CTCAATGAAA
1201AAATGATAAC AAAAACAGTG GCCCGGTATT CGCAACAGCT TAATGATCTG AAAGCTGAGA
1261ATGCAAGGCT GAATTCAGAA TTGGAGAAGG AAAAACACAA CAAAGAAAGA CTAGAAGCTG
1321AAGTTGAATC CCTCCATTCT AGCCTAGCCA CTGCTATAAA TGAGTACAAT GAAATTGTGG
1381AAAGAAAAGA CCTAGAACTA GTTTTATGGA GAGCAGATGA TGTTTCTAGA CATGAAAAAA
1441TGGGTTCTAA TATTTCTCAA CTAACAGATA AGAATGAGTT GCTTACTGAA CAGGTCCATA
1501AAGCTCGGGT GAAGTTCAAT ACCTTAAAAG GTAAGCTCCG TGAGACAAGA GATGCTCTCA
1561GGGAAAAGAC ATTGGCTTTA GGAAGTGTAC AGCTGGACCT AAGGCAAGCA CAGCATCGAA
1621TAAAGGAAAT GAAGCAGATG CATCCAAATG GAGAAGCTAA AGAAAGTCAA TCCATTGGAA
1681AGCAGAACTC TTTAGAGGAG AGAATACGTC AACAAGAACT TGAAAATCTC TTGCTTGAAC
1741GACAACTAGA GGATGCTCGT AAGGAAGGCG ATAATAAAGA GATAGTCATT AATATCCACA
1801GAGACTGTCT TGAGAATGGA AAGGAAGATC TTCTAGAAGA AAGAAATAAG GAATTAATGA
1861AAGAATATAA TTATTTAAAA GAAAAACTGC TTCAGTGTGA AAAAGAAAAA GCAGAAAGAG
1921AAGTGATTGT GAGAGAATTT CAAGAAGAAC TGGTCGATCA CCTTAAAACA TTTTCAATAT
1981CAGAGTCTCC ACTGGAAGGT ACATCACATT GTCATATTAA TTTGAATGAG ACATGGACTT
2041CAAAGAAGAA ATTATTTCAA GTAGAAATTC AACCTGAAGA AAAACATGAA GAATTCAGAA
2101AACTTTTTGA ATTAATATCA TTACTGAACT ATACTGCGGA CCAAATAAGA AAGAAAAATC
2161GTGAATTAGA AGAAGAGGCA ACTGGATATA AGAAATGCCT AGAAATGACA ATAAATATGT
2221TAAATGCATT TGCAAATGAG GACTTCAATT GCCATGGAGA CTTAAATACA GACCAACTGA
2281AAATGGATAT TCTGTTTAAG AAGCTAAAAC AGAAGTTTAA TGATCTTGTG GCCGAGAAGG
2341AAGCTGTGTC TTCAGAATGT GTCAATTTGG CCAAAGACAA TGAAGTTCTT CATCAGGAGT
2401TATTATCTAT GAGAAATGTA CAAGAGAAAT GTGAAAAACT TGAGAAGGAT AAAAAGATGT
2461TGGAAGAAGA AGTATTAAAT CTTAAGACAC ATATGGAAAA AGATATGGTA GAACTTGGTA
2521AACTACAAGA ATATAAATCG GAGCTGGATG AAAGGGCAGT GCAGGAAATA GAAAAATTAG
2581AAGAAATCCA TTTACAGAAA CAAGCAGAAT ATGAAAAACA ATTAGAGCAG TTAAACAAGG
2641ATAATACGGC TTCACTAAAA AAGAAGGAAC TCACACTTAA AGATGTGGAA TGTAAATTCT
2701CCAAAATGAA AACTGCTTAT GAAGAGGTTA CAACTGAATT AGAAGAATTT AAGGAAGTCT
2761TTGCAGCAGC AGTGAAAGCT AACAATTCCA TGTCAAAAAA ATTAATGAAA TCGGATAAGA
2821AAATAGCAGT GATCAGCACC AAGCTCTTTA CGGAGAAACA GCGGATGAAA TATTTTCTCA
2881GCACTCTTCC TACAAGGCCA GAACCAGAGT TACCTTGTGT TGAAAATCTT AATAGTATAG
2941AACTCAACAG AAAATATATT CCCAAAACGG CCATAAGAAT TCCTACTTCA AACCCACAGA
3001CTTCAAATAA CTGCAAGAAC TTCTTGACTG AGGTTTTGCT ATGTTTGCCA ACTTTCTTGT
3061ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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