Transcript: Human NM_001353432.2

Homo sapiens ankyrin repeat domain 18B (ANKRD18B), mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
ANKRD18B (441459)
Length:
3786
CDS:
240..3785

Additional Resources:

NCBI RefSeq record:
NM_001353432.2
NBCI Gene record:
ANKRD18B (441459)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001353432.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163302 GCTCAGACTCAGCAATTCCAT pLKO.1 3501 CDS 100% 3.000 2.100 N ANKRD18B n/a
2 TRCN0000163336 GCTCTGCGTGAAGGATTGTTT pLKO.1 3446 CDS 100% 5.625 3.375 N ANKRD18B n/a
3 TRCN0000162695 CAAGAAGAACTGGTCGATCAT pLKO.1 2136 CDS 100% 4.950 2.475 Y ANKRD18B n/a
4 TRCN0000187188 CCAGAGTTACCTTGTGTTGAA pLKO.1 3099 CDS 100% 4.950 2.475 Y ANKRD18A n/a
5 TRCN0000203883 CTACTTCAAACCCACAGACTT pLKO.1 3178 CDS 100% 4.950 2.475 Y ANKRD18A n/a
6 TRCN0000203324 GACTTCAAATAACTGCAAGAA pLKO.1 3194 CDS 100% 4.950 2.475 Y ANKRD18A n/a
7 TRCN0000163478 GCCTTGGGAAGTCATTCTCAA pLKO.1 3744 CDS 100% 4.950 2.475 Y ANKRD18B n/a
8 TRCN0000159733 GCTAAAGAAAGTCAATCCATT pLKO.1 1851 CDS 100% 4.950 2.475 Y ANKRD18B n/a
9 TRCN0000138852 GCTCTCCATTATGCCGTGTAT pLKO.1 648 CDS 100% 4.950 2.475 Y ANKRD20A3 n/a
10 TRCN0000152379 GCCAATCCAAACATTAAGGAT pLKO.1 612 CDS 100% 3.000 1.500 Y ANKRD19P n/a
11 TRCN0000151931 CCATGCAAATATTGAAGCACT pLKO.1 707 CDS 100% 2.640 1.320 Y ANKRD19P n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001353432.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09894 pDONR223 100% 81.1% 78% None (many diffs) n/a
2 ccsbBroad304_09894 pLX_304 0% 81.1% 78% V5 (many diffs) n/a
3 TRCN0000475606 CCGGTTCTGATATGTTTTATAAAT pLX_317 11.9% 81.1% 78% V5 (many diffs) n/a
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