Construct: ORF ccsbBroadEn_09895

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015113.1_s300c1, BRDN0000386940
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX32 (254122)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 254122 SNX32 sorting nexin 32 NM_152760.3 99.7% 99.2% 463C>A;845C>T;1061C>A
2 human 254122 SNX32 sorting nexin 32 XM_006718488.4 96.9% 94.1% (many diffs)
3 human 254122 SNX32 sorting nexin 32 XM_024448417.1 87.5% 72.8% (many diffs)
4 human 254122 SNX32 sorting nexin 32 XM_024448418.1 86.1% 71.6% (many diffs)
5 human 254122 SNX32 sorting nexin 32 XM_017017473.1 67.8% 65.4% (many diffs)
6 human 254122 SNX32 sorting nexin 32 XR_001747821.2 65.4% (many diffs)
7 human 254122 SNX32 sorting nexin 32 XM_024448419.1 61.4% 48.7% (many diffs)
8 human 254122 SNX32 sorting nexin 32 XM_024448420.1 61.4% 48.7% (many diffs)
9 human 254122 SNX32 sorting nexin 32 XR_002957137.1 49.4% (many diffs)
10 human 254122 SNX32 sorting nexin 32 XR_001747822.2 48.3% (many diffs)
11 mouse 225861 Snx32 sorting nexin 32 NM_001024560.2 86.6% 90% (many diffs)
12 mouse 225861 Snx32 sorting nexin 32 XM_006531706.3 76.4% 78.4% (many diffs)
13 mouse 225861 Snx32 sorting nexin 32 XM_011248617.2 75.9% 56.6% (many diffs)
14 mouse 225861 Snx32 sorting nexin 32 XM_011248618.1 54.2% 36.5% (many diffs)
15 mouse 225861 Snx32 sorting nexin 32 XR_388254.3 51.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1275
ORF length:
1209
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GACGTATGCG GAGGTTGGGA AGGAGGGCAA GCCTTCCTGT GCATCGGTGG
121ATCTGCAGGG AGACAGCTCC TTACAGGTGG AGATTTCTGA CGCAGTGAGT GAGCGGGACA
181AGGTGAAATT CACTGTTCAA ACAAAGAGCT GCCTCCCTCA CTTCGCCCAG ACCGAGTTCT
241CAGTCGTGCG GCAGCACGAG GAGTTCATCT GGCTGCATGA TGCCTACGTG GAGAATGAGG
301AGTACGCCGG CCTCATCATC CCCCCAGCCC CTCCGAGGCC AGACTTTGAG GCTTCGAGGG
361AAAAGCTACA GAAATTGGGC GAGGGGGACA GCTCTGTCAC TCGGGAAGAG TTTGCCAAGA
421TGAAGCAGGA GCTGGAAGCG GAGTACCTGG CCATCTTTAA GAAGACAGTT GCGATGCACG
481AAGTCTTTCT GCAGCGCCTG GCGGCCCACC CCACCCTGCG TCGAGACAAC AACTTCTTTG
541TGTTTTTGGA ATATGGACAG GATCTGAGTG TCCGGGGGAA GAACAGGAAG GAGCTCCTCG
601GAGGGTTTCT GAGGAATATT GTGAAGTCCG CGGATGAAGC CCTCATCACG GGCATGTCAG
661GGCTCAAGGA GGTGGATGAC TTCTTTGAGC ATGAGAGGAC CTTCCTGTTG GAGTATCACA
721CCCGTATCCG AGATGCCTGC CTGCGGGCCG ACCGCGTCAT GCGCGCCCAC AAGTGCCTGG
781CAGACGATTA TATCCCTATC TCAGCTGCGC TGAGCAGTCT GGGAACACAG GAAGTCAACC
841AGCTAAGGAC GAGCTTCCTC AAATTGGCAG AGCTCTTTGA ACGGCTGAGG AAGCTGGAGG
901GCCGGGTGGT TTCCGATGAG GACCTGAAGC TGTCAGACAT GCTGAGGTAC TACATGCGTG
961ACTCACAGGC AGCCAAGGAC CTGCTGTACC GGCGGCTGCG GGCACTGGCC GACTACGAGA
1021ATGCCAACAA GGCGCTGGAC AAGGCGCGCA CCAGGAACCG GGAGGTGCGG CCCGCCGAGA
1081GCCACCAGCA GCTGTGCTGC CAACGCTTCG AGCGCCTCTC CGACTACGCC AAGCAAGAGC
1141TCATGGACTT CAAGTCCCGC CGGGTCTCCT CTTTTCGAAA GAATCTCATT GAGCTGGCAG
1201AGCTGGAGCT CAAACACGCC AAGGCCAGCA CCCTGATTCT CCGGAACACC CTTGTTGCCC
1261TAAAGGGGGA GCCTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1321tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)