Construct: ORF ccsbBroadEn_09934

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005870.1_s300c1, BRDN0000385943
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MKX (283078)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283078 MKX mohawk homeobox NM_001242702.2 99.7% 99.7% 31_32delGGinsTC;852C>T
2 human 283078 MKX mohawk homeobox NM_173576.3 99.7% 99.7% 31_32delGGinsTC;852C>T
3 human 283078 MKX mohawk homeobox XM_017016105.1 99.7% 99.7% 31_32delGGinsTC;852C>T
4 human 283078 MKX mohawk homeobox XM_017016106.1 99.7% 99.7% 31_32delGGinsTC;852C>T
5 human 283078 MKX mohawk homeobox XM_017016108.1 82.3% 82.3% 31_32delGGinsTC;852C>T;873_874ins183
6 human 283078 MKX mohawk homeobox XM_017016107.1 81.9% 80.4% (many diffs)
7 mouse 210719 Mkx mohawk homeobox NM_177595.4 84.7% 88.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1122
ORF length:
1056
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CACCATCGTC TTCAACAAGC TCAGCTCTGC GGTGCTGTTT GAGGACGGAG
121GCGCCTCGGA GCGGGAGCGG GGTGGCCGGC CCTACAGCGG TGTCCTGGAC AGTCCTCACG
181CCCGCCCCGA GGTGGGCATT CCCGACGGCC CGCCCCTCAA GGACAACCTC GGCCTGAGAC
241ACCGGAGGAC CGGCGCCCGG CAGAATGGCG GGAAGGTGAG GCACAAGCGG CAGGCCCTGC
301AAGACATGGC GCGACCCCTC AAGCAGTGGC TTTACAAGCA CCGTGACAAC CCGTACCCCA
361CCAAGACCGA GAAGATACTC TTGGCCCTCG GCTCGCAGAT GACGCTAGTG CAGGTGTCAA
421ATTGGTTTGC TAATGCAAGA CGTCGGCTTA AGAATACCGT TCGACAGCCA GATTTAAGCT
481GGGCTTTGAG AATAAAGTTA TACAACAAGT ATGTTCAAGG CAATGCTGAA CGGCTTAGCG
541TAAGCAGTGA TGACTCATGT TCTGAAGATG GAGAAAATCC TCCAAGAACC CACATGAACG
601AAGGGGGCTA TAATACCCCA GTTCACCATC CTGTGATTAA AAGTGAGAAT TCGGTCATCA
661AAGCGGGAGT GAGGCCAGAG TCACGGGCCA GTGAGGACTA CGTGGCACCC CCCAAATACA
721AGAGCAGCTT GTTGAACCGT TACCTTAATG ACTCTTTGAG ACATGTCATG GCCACGAACA
781CTACCATGAT GGGAAAAACA AGGCAAAGAA ACCACTCGGG ATCTTTTAGC TCCAATGAAT
841TTGAGGAAGA ATTAGTGTCT CCATCGTCAT CAGAAACTGA AGGCAACTTT GTCTATCGCA
901CAGACACTCT GGAAAATGGA TCCAATAAGG GTGAAAGCGC AGCTAACAGA AAAGGACCAA
961GCAAGGATGA CACGTATTGG AAGGAGATCA ACGCAGCTAT GGCCTTAACA AATCTTGCAC
1021AGGGAAAGGA CAAACTGCAG GGAACTACCA GCTGCATCAT CCAGAAGTCG TCCCATATAG
1081CAGAAGTAAA GACTGTCAAA GTGCCGCTGG TGCAGCAGTT TTACCCAACT TTCTTGTACA
1141AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)