Transcript: Human XM_017016106.1

PREDICTED: Homo sapiens mohawk homeobox (MKX), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MKX (283078)
Length:
3867
CDS:
454..1512

Additional Resources:

NCBI RefSeq record:
XM_017016106.1
NBCI Gene record:
MKX (283078)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017016106.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000419234 CGCTAGTGCAGGTGTCAAATT pLKO_005 791 CDS 100% 13.200 18.480 N Mkx n/a
2 TRCN0000421345 GTGCCTTGCTTCCCGACAATA pLKO_005 1764 3UTR 100% 13.200 18.480 N MKX n/a
3 TRCN0000015642 CCTCAAGCAGTGGCTTTACAA pLKO.1 705 CDS 100% 5.625 7.875 N MKX n/a
4 TRCN0000015639 CGTCCCATATAGCAGAAGTAA pLKO.1 1457 CDS 100% 5.625 7.875 N MKX n/a
5 TRCN0000422067 GTTCACCATCCTGTGATTAAA pLKO_005 1009 CDS 100% 15.000 10.500 N MKX n/a
6 TRCN0000422576 ATTAGCCTGTGTGCATCATTC pLKO_005 1844 3UTR 100% 10.800 7.560 N MKX n/a
7 TRCN0000424915 TAATGCAAGACGTCGGCTTAA pLKO_005 819 CDS 100% 10.800 7.560 N MKX n/a
8 TRCN0000015640 CCAAGCAAGGATGACACGTAT pLKO.1 1345 CDS 100% 4.950 3.465 N MKX n/a
9 TRCN0000015638 GCCAGATTTAAGCTGGGCTTT pLKO.1 855 CDS 100% 4.050 2.835 N MKX n/a
10 TRCN0000015641 CCAATGAATTTGAGGAAGAAT pLKO.1 1220 CDS 100% 5.625 3.375 N MKX n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017016106.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09934 pDONR223 100% 99.7% 99.7% None 31_32delGGinsTC;852C>T n/a
2 ccsbBroad304_09934 pLX_304 0% 99.7% 99.7% V5 31_32delGGinsTC;852C>T n/a
3 TRCN0000473396 TTTGTCACGATCCCTGTGCTCGGG pLX_317 36% 99.7% 99.7% V5 31_32delGGinsTC;852C>T n/a
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