Construct: ORF ccsbBroadEn_09990
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009274.1_s300c1, BRDN0000456554
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ILDR1 (286676)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 286676 | ILDR1 | immunoglobulin like domain ... | NM_175924.4 | 99.9% | 100% | 1413T>G |
| 2 | human | 286676 | ILDR1 | immunoglobulin like domain ... | XM_005247389.4 | 95.8% | 94.7% | (many diffs) |
| 3 | human | 286676 | ILDR1 | immunoglobulin like domain ... | NM_001199799.2 | 91.8% | 91.9% | 645_776del;1545T>G |
| 4 | human | 286676 | ILDR1 | immunoglobulin like domain ... | NM_001199800.2 | 88.2% | 81.1% | (many diffs) |
| 5 | human | 286676 | ILDR1 | immunoglobulin like domain ... | XM_011512738.2 | 88% | 87.1% | (many diffs) |
| 6 | human | 286676 | ILDR1 | immunoglobulin like domain ... | XM_011512739.2 | 73% | 73.1% | 0_1ins405;1008T>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1575
- ORF length:
- 1506
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCATGGCCC AAACTGCCCG CACCTTGGCT GCTGCTCTGC ACCTGGCTCC 121 CAGCAGGGTG CCTGTCCTTG CTTGTGACGG TCCAGCACAC AGAACGCTAT GTCACCCTGT 181 TTGCCTCTAT CATCCTCAAA TGTGACTACA CCACCTCTGC CCAGCTCCAG GACGTGGTGG 241 TGACATGGCG CTTCAAGTCC TTCTGCAAGG ACCCTATCTT TGACTACTAC TCAGCGTCAT 301 ACCAGGCAGC TTTATCCCTG GGCCAGGACC CATCCAATGA CTGCAACGAC AACCAGCGGG 361 AAGTTCGCAT AGTGGCCCAG CGGCGGGGGC AGAATGAGCC CGTGCTGGGG GTAGATTACC 421 GGCAGCGCAA GATCACCATC CAGAACCGAG CAGATCTCGT GATAAATGAA GTGATGTGGT 481 GGGACCATGG AGTGTATTAC TGCACCATTG AGGCTCCAGG GGACACATCA GGAGACCCCG 541 ATAAGGAAGT AAAGCTCATC GTCCTACACT GGCTGACAGT GATCTTCATC ATCCTGGGAG 601 CCCTCCTCCT CCTGCTGCTG ATTGGAGTGT GCTGGTGCCA GTGCTGTCCT CAGTATTGCT 661 GCTGCTATAT CCGCTGTCCC TGCTGTCCTG CCCACTGCTG CTGTCCTGAG GAAGATTTGT 721 CCCTGCCGTC CAGCCTCCCG CAGATGCCAA TGACCCAGAC CACCAATCAG CCTCCCATCG 781 CCAATGGTGT CCTGGAGTAT TTGGAGAAAG AACTGCGGAA CCTCAACCTG GCCCAGCCTC 841 TGCCCCCTGA CCTCAAAGGC AGATTTGGCC ATCCCTGCAG CATGCTGTCC TCCCTGGGCT 901 CTGAGGTCGT GGAACGCAGA ATCATCCACC TGCCCCCACT GATCAGAGAC CTGTCATCCT 961 CAAGGAGGAC CAGTGACTCC CTGCACCAGC AGTGGCTCAC CCCAATTCCC TCCAGGCCCT 1021 GGGATCTGAG GGAGGGGAGA AGCCACCACC ATTACCCTGA TTTCCACCAG GAGCTCCAGG 1081 ACCGGGGGCC AAAGTCTTGG GCATTGGAAA GAAGGGAGTT GGACCCATCG TGGAGTGGAA 1141 GGCACCGTAG CTCTAGGCTG AATGGGTCAC CCATACACTG GTCAGACAGG GACAGCCTAA 1201 GCGATGTCCC CTCATCCAGT GAGGCACGCT GGCGGCCGAG CCACCCTCCT TTCAGGAGCC 1261 GCTGTCAGGA GAGGCCCCGC AGGCCCAGCC CCCGGGAGAG CACTCAGAGG CACGGGAGAC 1321 GACGCAGGCA CCGCAGCTAC TCTCCTCCCT TGCCCTCCGG CCTCAGTTCC TGGAGCTCTG 1381 AAGAGGACAA GGAGAGGCAG CCCCAGAGCT GGCGGGCCCA CCGCCGCGGC TCGCACTCCC 1441 CACACTGGCC CGAGGAGAAG CCGCCTAGCT ACCGCTCACT GGATATCACT CCAGGCAAGA 1501 ATAGCAGGAA AAAAGGGAGT GTGGAGAGGC GCTCGGAGAA AGACAGCTCT CATAGTGGAA 1561 GGAGTGTGGT CATTTTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 1621 tatcaatttg ttgcaacgaa c