Construct: ORF ccsbBroadEn_10005
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016709.1_s300c1, BRDN0000387050
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1QTNF9 (338872)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_001303137.2 | 99.5% | 99.6% | (many diffs) |
| 2 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_001303138.1 | 99.5% | 99.6% | (many diffs) |
| 3 | human | 338872 | C1QTNF9 | C1q and TNF related 9 | NM_178540.5 | 99.5% | 99.6% | (many diffs) |
| 4 | human | 387911 | C1QTNF9B | C1q and TNF related 9B | NM_001007537.2 | 99% | 97.8% | (many diffs) |
| 5 | human | 387911 | C1QTNF9B | C1q and TNF related 9B | NR_104426.1 | 33.6% | (many diffs) | |
| 6 | mouse | 239126 | C1qtnf9 | C1q and tumor necrosis fact... | XM_006518983.2 | 48.7% | 50.4% | (many diffs) |
| 7 | mouse | 239126 | C1qtnf9 | C1q and tumor necrosis fact... | XM_006518984.2 | 48.7% | 50.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GATCTGGTGG CTTCTGCTTG CCATTGAAAT CTGCACAGGG AACATAAACT 121 CACAGGACAC CTGCAGGCAA GGGCACCCTG GAATCCCTGG GAACCCCGGT CACAATGGTC 181 TGCCTGGAAG AGATGGACGA GACGGAGCGA AGGGTGACAA AGGCGATGCA GGAGAACCAG 241 GACGTCCTGG CAGCCCGGGG AAGGATGGGA CGAGTGGAGA GAAGGGAGAA CGAGGAGCAG 301 ATGGAAAAGT TGAAGCAAAA GGCATCAAAG GTGATCAAGG CTCAAGAGGA TCCCCAGGAA 361 AACATGGCCC CAAGGGGCTT GCAGGGCCCA TGGGAGAGAA AGGCCTCCGA GGAGAGACTG 421 GGCCTCAGGG GCAGAAGGGG AATAAGGGTG ACGTGGGTCC CACTGGTCCT GAGGGGCCAA 481 GGGGCAACAT TGGGCCTTTG GGCCCAACTG GTTTACCGGG CCCCATGGGC CCTATTGGAA 541 AGCCTGGTCC CAAGGGAGAA GCTGGACCCA CGGGGCCCCA GGGTGAGCCA GGAGTCCGGG 601 GAATAAGAGG CTGGAAAGGA GATCGAGGAG AGAAAGGGAA AATCGGTGAG ACTCTAGTCT 661 TGCCAAAAAG TGCTTTCACT GTGGGGCTCA CGGTGCTGAG CAAGTTTCCT TCTTCAGATG 721 TGCCCATTAA ATTTGATAAG ATCCTGTATA ACGAATTCAA CCATTATGAT ACAGCAGCGG 781 GGAAATTCAC GTGCCACATT GCTGGGGTCT ATTACTTCAC CTACCACATC ACTGTTTTCT 841 CCAGGAATGT TCAGGTGTCT TTGGTCAAAA ATGGAGTAAA AATACTGCAC ACCAAAGATG 901 CTTACATGAG CTCTGAGGAC CAGGCCTCTG GCGGCATTGT CCTGCAGCTG AAGCTCGGGG 961 ATGAGGTGTG GCTGCAGGTG ACAGGAGGAG AGAGGTTCAA TGGCTTGTTT GCTGATGAGG 1021 ACGATGACAC AACTTTCACA GGGTTCCTTC TGTTCAGCAG CCCGTGCCCA ACTTTCTTGT 1081 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c