Construct: ORF ccsbBroadEn_10360
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015170.1_s300c1, BRDN0000397695
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DPY19L2P2 (349152)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448957.1 | 27.5% | 20% | (many diffs) |
| 2 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448955.1 | 26% | 18.9% | (many diffs) |
| 3 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448954.1 | 25.2% | 18.4% | (many diffs) |
| 4 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448953.1 | 21.6% | 15.8% | (many diffs) |
| 5 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448952.1 | 20.9% | 15.3% | (many diffs) |
| 6 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448951.1 | 20.8% | 15.2% | (many diffs) |
| 7 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448950.1 | 20.2% | 14.8% | (many diffs) |
| 8 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448949.1 | 19.8% | 14.5% | (many diffs) |
| 9 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448948.1 | 18.8% | 13.7% | (many diffs) |
| 10 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019192.2 | 15.8% | 11.6% | (many diffs) |
| 11 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448945.1 | 15.6% | 11.5% | (many diffs) |
| 12 | human | 442523 | DPY19L2P4 | DPY19L2 pseudogene 4 | NR_003551.1 | 15.3% | (many diffs) | |
| 13 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448944.1 | 15.2% | 11.1% | (many diffs) |
| 14 | human | 283417 | DPY19L2 | dpy-19 like 2 | NM_173812.5 | 14.8% | 10.8% | (many diffs) |
| 15 | human | 554236 | DPY19L2P1 | DPY19L2 pseudogene 1 | NR_002833.2 | 12.6% | (many diffs) | |
| 16 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957316.1 | 9% | (many diffs) | |
| 17 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957315.1 | 8.7% | (many diffs) | |
| 18 | human | 349152 | DPY19L2P2 | DPY19L2 pseudogene 2 | NR_027768.1 | 8.3% | 1_314del;681_4361del | |
| 19 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957314.1 | 8.1% | (many diffs) | |
| 20 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957318.1 | 3.1% | (many diffs) | |
| 21 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957319.1 | 3% | (many diffs) | |
| 22 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_001748666.2 | 2.9% | (many diffs) | |
| 23 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957317.1 | 2.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 432
- ORF length:
- 366
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GAAACAAGGA GTAAGCCCAA AGCCGCTGCA ATCTTCCCGC CCCAGCCCGT 121 CTAAGCGGCC CTGCGGGGCC TCCCCCGCCC GGGAGCGGGA GGTGGAAAAG TCGGCCCTAG 181 GCGGCGGGAA ACTGCCGGGG GGCGCCAGGA GGTCCTCCCC GGGGAGGATC CCAAATCTGA 241 AAAAGCGAAA AGGCTTGGAG CTAAAGGTGG TGGCCAAGGC CCTTCTCGGC CCCTTCCAGT 301 TCGTCTGTAA TTCCCTGGCG CAGCTCCGGG AAGAGGTGCA CGAACTGCAG GCGCGGTGGT 361 TCCCCAGCAG AACCACTCTG CATCGCCGTC TTTGTGGCAA TTCTACATTG GTTACATTTA 421 GTAACACTTT TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 481 caatttgttg caacgaac