Construct: ORF ccsbBroadEn_10363
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009102.1_s300c1, BRDN0000393840
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GUSBP2 (387036)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102725009 | LOC102725009 | putative inactive beta-gluc... | XM_017030249.2 | 86.1% | 84.1% | (many diffs) |
| 2 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_133000.1 | 72.3% | (many diffs) | |
| 3 | human | 100049076 | GUSBP9 | GUSB pseudogene 9 | NR_033968.1 | 68.5% | (many diffs) | |
| 4 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132998.1 | 57.6% | (many diffs) | |
| 5 | human | 728411 | GUSBP1 | GUSB pseudogene 1 | NR_027028.2 | 56.1% | (many diffs) | |
| 6 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_003660.2 | 50.8% | (many diffs) | |
| 7 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132997.1 | 37.7% | (many diffs) | |
| 8 | human | 387036 | GUSBP2 | GUSB pseudogene 2 | NR_003504.3 | 34.9% | 1_347del;757C>G;768_1200del | |
| 9 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_024054.2 | 34.8% | 0_1ins49;372_1016del | |
| 10 | human | 2990 | GUSB | glucuronidase beta | XM_017012093.2 | 31.4% | 16.4% | (many diffs) |
| 11 | human | 2990 | GUSB | glucuronidase beta | XM_017012092.1 | 29.3% | 14.3% | (many diffs) |
| 12 | human | 2990 | GUSB | glucuronidase beta | XM_017012091.1 | 27.7% | 14.4% | (many diffs) |
| 13 | human | 2990 | GUSB | glucuronidase beta | XM_011516114.2 | 27.7% | 13.6% | (many diffs) |
| 14 | human | 2990 | GUSB | glucuronidase beta | NM_001293105.2 | 27.7% | 13.7% | (many diffs) |
| 15 | human | 653188 | GUSBP3 | GUSB pseudogene 3 | NR_027386.2 | 27% | 1_325del;746_1551del | |
| 16 | human | 2990 | GUSB | glucuronidase beta | NM_001293104.2 | 26% | 12% | (many diffs) |
| 17 | human | 2990 | GUSB | glucuronidase beta | XM_011516113.1 | 24.8% | 12.1% | (many diffs) |
| 18 | human | 11042 | GUSBP15 | GUSB pseudogene 15 | NR_034021.1 | 23.7% | (many diffs) | |
| 19 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_029426.1 | 21.6% | 1_243del;664_1943del | |
| 20 | human | 2990 | GUSB | glucuronidase beta | XM_005250297.4 | 20% | 10% | (many diffs) |
| 21 | human | 2990 | GUSB | glucuronidase beta | NM_000181.4 | 18.5% | 8.7% | (many diffs) |
| 22 | human | 2990 | GUSB | glucuronidase beta | XR_001744660.2 | 17.9% | (many diffs) | |
| 23 | human | 653080 | GUSBP16 | GUSB pseudogene 16 | NR_146391.1 | 17.5% | 1_386del;607C>A;807_2383del | |
| 24 | human | 2990 | GUSB | glucuronidase beta | XR_927461.3 | 16.7% | (many diffs) | |
| 25 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NR_146599.1 | 9.1% | (many diffs) | |
| 26 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | XR_002958912.1 | 7.8% | (many diffs) | |
| 27 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_132999.1 | 7.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 486
- ORF length:
- 420
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TAGGAGCAAC CCTGTAAAAC CAGCCTTAGA CTATTTTTCA AACAGGCTGG 121 TGAATTACCA GATCTCCGTC AAGTGCAGTA ACCAGTTCAA GTTGGAAGTG TGTCTTTTGA 181 ATGCAGAAAA CAAAGTCGTG GACAACCAGG CTGGGACCCA GGGCCAGCTG AAGGTGCTGG 241 GTGCCAACCT CTGGTGGCCG TACCTGATGC ACGAACACCC CGCCTACCTG TACTCGTGGG 301 AGGATGGTGA TTGCTCACAC CAAAGCCTTG GACCCCTCCC AGCCTGTGAC CTTTGTGACC 361 AACTCCACCT ACGCAGCAGA CAAGGGGGCT CTGTATGTGG ATGTGATCCG TGTGAACAGC 421 TACTACTCTT GGTATCGCAA CTACGGGCAC CTGGAGTTGA TTCAGCTGCA GCTGGCCGCC 481 CAGTTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 541 gttgcaacga ac