Construct: ORF ccsbBroadEn_10389
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008732.1_s300c1, BRDN0000390768
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | NM_174919.3 | 24.7% | 23.1% | (many diffs) |
| 2 | human | 440461 | ARHGAP27P2 | Rho GTPase activating prote... | NR_027283.1 | 13% | 1_261del;478_1660del | |
| 3 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_011524473.2 | 11% | 10.3% | (many diffs) |
| 4 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_006721750.4 | 10.5% | 9.9% | (many diffs) |
| 5 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_017024313.1 | 10.3% | 9.6% | (many diffs) |
| 6 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_011524471.1 | 7.5% | 7% | (many diffs) |
| 7 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_006721747.2 | 7.4% | 7% | (many diffs) |
| 8 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_011524470.2 | 7.4% | 7% | (many diffs) |
| 9 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | NM_001282290.1 | 7.3% | 6.8% | (many diffs) |
| 10 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_006721745.2 | 7.3% | 6.8% | (many diffs) |
| 11 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_011524469.1 | 7.2% | 6.7% | (many diffs) |
| 12 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_011524468.1 | 7% | 6.6% | (many diffs) |
| 13 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XM_017024311.1 | 7% | 6.6% | (many diffs) |
| 14 | human | 146880 | ARHGAP27P1 | Rho GTPase activating prote... | NR_027487.2 | 6.8% | (many diffs) | |
| 15 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_429875.3 | 6.6% | (many diffs) | |
| 16 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_001752447.1 | 6.3% | (many diffs) | |
| 17 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_429876.3 | 6.3% | (many diffs) | |
| 18 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_001752448.1 | 6.2% | (many diffs) | |
| 19 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_429873.3 | 6.2% | (many diffs) | |
| 20 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_001752446.1 | 6.1% | (many diffs) | |
| 21 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_934416.2 | 4.2% | (many diffs) | |
| 22 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_934417.3 | 4.1% | (many diffs) | |
| 23 | human | 201176 | ARHGAP27 | Rho GTPase activating prote... | XR_002957982.1 | 3.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 282
- ORF length:
- 216
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GGCGTATGTG GAGGGGGATG TCTACCTGGT GGTGGAGCAC CCCTTCGAGT 121 ATACCCGCAA GGACTGGCGC CGCGTGGCCA TCTGGCCCAA TGAGCGCTAC TGGCTGCTGC 181 GGCGCAGCAC GGAGCACTGG TGGCACGTGC GGCGCGAGCC TGGCGGCCAC CCCTTCTACC 241 TGCCCGCGCA GTACGTGCGC GAGCTGCCTG CGCTGGGCAA ATGCCCAACT TTCTTGTACA 301 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac