Construct: ORF ccsbBroadEn_10410

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012667.1_s300c1, BRDN0000394521
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GUSBP9 (100049076)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375513 GUSBP4 GUSB pseudogene 4 NR_133000.1 48.6% (many diffs)
2 human 100049076 GUSBP9 GUSB pseudogene 9 NR_033968.1 44.2% 1_295del;566_610del
3 human 106660613 LINC00680-GUSBP4 LINC00680-GUSBP4 readthrough NR_132998.1 37% (many diffs)
4 human 728411 GUSBP1 GUSB pseudogene 1 NR_027028.2 35.5% (many diffs)
5 human 106660613 LINC00680-GUSBP4 LINC00680-GUSBP4 readthrough NR_003660.2 33.5% (many diffs)
6 human 102725009 LOC102725009 putative inactive beta-gluc... XM_017030249.2 33.4% 13.8% (many diffs)
7 human 11039 GUSBP14 GUSB pseudogene 14 NR_024054.2 25.8% (many diffs)
8 human 106660613 LINC00680-GUSBP4 LINC00680-GUSBP4 readthrough NR_132997.1 25.1% (many diffs)
9 human 387036 GUSBP2 GUSB pseudogene 2 NR_003504.3 21.7% (many diffs)
10 human 2990 GUSB glucuronidase beta XM_017012093.2 21.2% 15.3% (many diffs)
11 human 2990 GUSB glucuronidase beta XM_017012092.1 19.4% 14% (many diffs)
12 human 2990 GUSB glucuronidase beta XM_011516114.2 18.7% 13.5% (many diffs)
13 human 2990 GUSB glucuronidase beta NM_001293105.2 18.4% 13.3% (many diffs)
14 human 2990 GUSB glucuronidase beta XM_017012091.1 18.4% 13.3% (many diffs)
15 human 2990 GUSB glucuronidase beta NM_001293104.2 17.3% 12.5% (many diffs)
16 human 653188 GUSBP3 GUSB pseudogene 3 NR_027386.2 17.2% (many diffs)
17 human 2990 GUSB glucuronidase beta XM_011516113.1 16.5% 11.9% (many diffs)
18 human 2990 GUSB glucuronidase beta NM_001284290.2 15.8% 11.4% (many diffs)
19 human 11042 GUSBP15 GUSB pseudogene 15 NR_034021.1 15% (many diffs)
20 human 11039 GUSBP14 GUSB pseudogene 14 NR_029426.1 13.5% (many diffs)
21 human 2990 GUSB glucuronidase beta XM_005250297.4 13.3% 9.6% (many diffs)
22 human 2990 GUSB glucuronidase beta NM_000181.4 12.2% 8.8% (many diffs)
23 human 2990 GUSB glucuronidase beta XR_001744660.2 11.9% (many diffs)
24 human 2990 GUSB glucuronidase beta XR_927461.3 11% (many diffs)
25 human 653080 GUSBP16 GUSB pseudogene 16 NR_146391.1 11% (many diffs)
26 human 11039 GUSBP14 GUSB pseudogene 14 XR_002958912.1 5.2% (many diffs)
27 human 375513 GUSBP4 GUSB pseudogene 4 NR_132999.1 5.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
339
ORF length:
270
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGATTGCT CACACCAAAG CCTTGGACCC CTCCCAGCCT GTGACCTTTG
121GGACCAACTC CACCTACGCA GCAGACAAGG GGGCTCTGTA TGTGGATGTG ATCCGTGTGA
181ACAGCTACTA CTCTTGGTAT CGCAACTACG GGCACCTGGA GTTGATTCGG CTGCAGCTGG
241CCGCCCAGTT TGAGAATTGG TGTAAGACAT CACAATCCCA TTATTCAGAG CGCGTATGGA
301GTGGAAACGC TTGTAGGGCT TCACCAGGTA AGCGGTGTTT GCCAACTTTC TTGTACAAAG
361Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)