Construct: ORF ccsbBroadEn_10410
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012667.1_s300c1, BRDN0000394521
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GUSBP9 (100049076)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_133000.1 | 48.6% | (many diffs) | |
| 2 | human | 100049076 | GUSBP9 | GUSB pseudogene 9 | NR_033968.1 | 44.2% | 1_295del;566_610del | |
| 3 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132998.1 | 37% | (many diffs) | |
| 4 | human | 728411 | GUSBP1 | GUSB pseudogene 1 | NR_027028.2 | 35.5% | (many diffs) | |
| 5 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_003660.2 | 33.5% | (many diffs) | |
| 6 | human | 102725009 | LOC102725009 | putative inactive beta-gluc... | XM_017030249.2 | 33.4% | 13.8% | (many diffs) |
| 7 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_024054.2 | 25.8% | (many diffs) | |
| 8 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132997.1 | 25.1% | (many diffs) | |
| 9 | human | 387036 | GUSBP2 | GUSB pseudogene 2 | NR_003504.3 | 21.7% | (many diffs) | |
| 10 | human | 2990 | GUSB | glucuronidase beta | XM_017012093.2 | 21.2% | 15.3% | (many diffs) |
| 11 | human | 2990 | GUSB | glucuronidase beta | XM_017012092.1 | 19.4% | 14% | (many diffs) |
| 12 | human | 2990 | GUSB | glucuronidase beta | XM_011516114.2 | 18.7% | 13.5% | (many diffs) |
| 13 | human | 2990 | GUSB | glucuronidase beta | NM_001293105.2 | 18.4% | 13.3% | (many diffs) |
| 14 | human | 2990 | GUSB | glucuronidase beta | XM_017012091.1 | 18.4% | 13.3% | (many diffs) |
| 15 | human | 2990 | GUSB | glucuronidase beta | NM_001293104.2 | 17.3% | 12.5% | (many diffs) |
| 16 | human | 653188 | GUSBP3 | GUSB pseudogene 3 | NR_027386.2 | 17.2% | (many diffs) | |
| 17 | human | 2990 | GUSB | glucuronidase beta | XM_011516113.1 | 16.5% | 11.9% | (many diffs) |
| 18 | human | 2990 | GUSB | glucuronidase beta | NM_001284290.2 | 15.8% | 11.4% | (many diffs) |
| 19 | human | 11042 | GUSBP15 | GUSB pseudogene 15 | NR_034021.1 | 15% | (many diffs) | |
| 20 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_029426.1 | 13.5% | (many diffs) | |
| 21 | human | 2990 | GUSB | glucuronidase beta | XM_005250297.4 | 13.3% | 9.6% | (many diffs) |
| 22 | human | 2990 | GUSB | glucuronidase beta | NM_000181.4 | 12.2% | 8.8% | (many diffs) |
| 23 | human | 2990 | GUSB | glucuronidase beta | XR_001744660.2 | 11.9% | (many diffs) | |
| 24 | human | 2990 | GUSB | glucuronidase beta | XR_927461.3 | 11% | (many diffs) | |
| 25 | human | 653080 | GUSBP16 | GUSB pseudogene 16 | NR_146391.1 | 11% | (many diffs) | |
| 26 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | XR_002958912.1 | 5.2% | (many diffs) | |
| 27 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_132999.1 | 5.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 339
- ORF length:
- 270
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGATTGCT CACACCAAAG CCTTGGACCC CTCCCAGCCT GTGACCTTTG 121 GGACCAACTC CACCTACGCA GCAGACAAGG GGGCTCTGTA TGTGGATGTG ATCCGTGTGA 181 ACAGCTACTA CTCTTGGTAT CGCAACTACG GGCACCTGGA GTTGATTCGG CTGCAGCTGG 241 CCGCCCAGTT TGAGAATTGG TGTAAGACAT CACAATCCCA TTATTCAGAG CGCGTATGGA 301 GTGGAAACGC TTGTAGGGCT TCACCAGGTA AGCGGTGTTT GCCAACTTTC TTGTACAAAG 361 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac