Construct: ORF ccsbBroadEn_10434

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005205.1_s300c1, BRDN0000391696
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
IVD (3712)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3712 IVD isovaleryl-CoA dehydrogenase NM_002225.5 99.9% 99.7% 30G>T
2 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001354599.3 93.5% 93.3% 30G>T;235_321del
3 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001354597.3 93.1% 90.7% (many diffs)
4 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001159508.3 92.8% 92.6% 30G>T;144_145ins90
5 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001354598.3 90.6% 84.4% (many diffs)
6 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022154.2 87.1% 84.9% (many diffs)
7 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022153.1 86.7% 82.4% (many diffs)
8 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001354600.3 85.1% 79.3% (many diffs)
9 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022155.2 84.4% 83.2% (many diffs)
10 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022150.1 84.4% 77.7% (many diffs)
11 human 3712 IVD isovaleryl-CoA dehydrogenase NM_001354601.3 81% 78% (many diffs)
12 human 3712 IVD isovaleryl-CoA dehydrogenase XM_006720495.3 79.5% 73% (many diffs)
13 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022149.1 76.1% 73.2% (many diffs)
14 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022157.1 74.5% 68.5% (many diffs)
15 human 3712 IVD isovaleryl-CoA dehydrogenase XR_001751264.1 63.1% (many diffs)
16 human 3712 IVD isovaleryl-CoA dehydrogenase XM_017022158.2 59.9% 58.2% (many diffs)
17 human 3712 IVD isovaleryl-CoA dehydrogenase NR_148925.2 49.5% (many diffs)
18 human 3712 IVD isovaleryl-CoA dehydrogenase XR_001751263.1 26.7% (many diffs)
19 mouse 56357 Ivd isovaleryl coenzyme A dehyd... NM_019826.3 86.9% 89.4% (many diffs)
20 mouse 56357 Ivd isovaleryl coenzyme A dehyd... XM_006499925.1 79.9% 82.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1335
ORF length:
1269
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttgAGATGGC GACTGCGACT CGGCTGCTGG GGTGTCGTGT GGCGAGCTGG AGGCTGCGGC
121CGCCGCTTGC CGGCTTCGTT TCCCAGCGGG CCCACTCGCT TTTGCCCGTG GACGATGCAA
181TCAATGGGCT AAGCGAGGAG CAGAGGCAGC TTCGTCAGAC CATGGCTAAG TTCCTTCAGG
241AGCACCTGGC CCCCAAGGCC CAGGAGATCG ATCGCAGCAA TGAGTTCAAG AACCTGCGAG
301AATTTTGGAA GCAGCTGGGG AACCTGGGCG TATTGGGCAT CACAGCCCCT GTTCAGTATG
361GCGGCTCCGG CCTGGGCTAC CTGGAGCATG TGCTGGTGAT GGAGGAGATA TCCCGAGCTT
421CCGGAGCAGT GGGGCTCAGT TACGGTGCCC ACTCCAACCT CTGCATCAAC CAGCTTGTAC
481GCAATGGGAA TGAGGCCCAG AAAGAGAAGT ATCTCCCGAA GCTGATCAGT GGTGAGTACA
541TCGGAGCCCT GGCCATGAGT GAGCCCAATG CAGGCTCTGA TGTTGTCTCT ATGAAGCTCA
601AAGCGGAAAA GAAAGGAAAT CACTACATCC TGAATGGCAA CAAGTTCTGG ATCACTAATG
661GCCCTGATGC TGACGTCCTG ATTGTCTATG CCAAGACAGA TCTGGCTGCT GTGCCAGCTT
721CTCGGGGCAT CACAGCCTTC ATTGTGGAGA AGGGTATGCC TGGCTTTAGC ACCTCTAAGA
781AGCTGGACAA GCTGGGGATG AGGGGCTCTA ACACCTGTGA GCTAATCTTT GAAGACTGCA
841AGATTCCTGC TGCCAACATC CTGGGCCATG AGAATAAGGG TGTCTACGTG CTGATGAGTG
901GGCTGGACCT GGAGCGGCTG GTGCTGGCCG GGGGGCCTCT TGGGCTCATG CAAGCGGTCC
961TGGACCACAC CATTCCCTAC CTGCACGTGA GGGAAGCCTT TGGCCAGAAG ATCGGCCACT
1021TCCAGTTGAT GCAGGGGAAG ATGGCTGACA TGTACACCCG CCTCATGGCG TGTCGGCAGT
1081ATGTCTACAA TGTCGCCAAG GCCTGCGATG AGGGCCATTG CACTGCTAAG GACTGTGCAG
1141GTGTGATTCT TTACTCAGCT GAGTGTGCCA CACAGGTAGC CCTGGACGGC ATTCAGTGTT
1201TTGGTGGCAA TGGCTACATC AATGACTTTC CCATGGGCCG CTTTCTTCGA GATGCCAAGC
1261TGTATGAGAT AGGGGCTGGG ACCAGCGAGG TGAGGCGGCT GGTCATCGGC AGAGCCTTCA
1321ATGCAGACTT TCACTAGTca actttcttgt acaaagttgg cattataaga aagcattgct
1381tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)