Construct: ORF ccsbBroadEn_10507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009514.1_s300c1, BRDN0000392615
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNX7 (51375)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51375 | SNX7 | sorting nexin 7 | XM_017001428.1 | 99.9% | 100% | 951G>A |
| 2 | human | 51375 | SNX7 | sorting nexin 7 | NM_001364903.1 | 86.7% | 86.8% | 933_1085del;1104G>A |
| 3 | human | 51375 | SNX7 | sorting nexin 7 | XM_011541564.3 | 86.7% | 86.8% | 933_1085del;1104G>A |
| 4 | human | 51375 | SNX7 | sorting nexin 7 | XM_017001425.2 | 86.7% | 86.8% | 933_1085del;1104G>A |
| 5 | human | 51375 | SNX7 | sorting nexin 7 | XM_017001426.2 | 86.7% | 86.8% | 933_1085del;1104G>A |
| 6 | human | 51375 | SNX7 | sorting nexin 7 | XM_017001427.2 | 86.7% | 86.8% | 933_1085del;1104G>A |
| 7 | human | 51375 | SNX7 | sorting nexin 7 | XM_006710677.2 | 79.5% | 79.6% | 1_258del;1209G>A |
| 8 | human | 51375 | SNX7 | sorting nexin 7 | NM_015976.5 | 74.4% | 74.5% | 1_192del;1125_1277del;1296G>A |
| 9 | human | 51375 | SNX7 | sorting nexin 7 | NM_152238.4 | 62.2% | 62.3% | (many diffs) |
| 10 | human | 51375 | SNX7 | sorting nexin 7 | NR_033716.2 | 59.1% | 1_323del;1274G>A;1332_1703del | |
| 11 | mouse | 76561 | Snx7 | sorting nexin 7 | NM_001190156.1 | 72.9% | 78.9% | (many diffs) |
| 12 | mouse | 76561 | Snx7 | sorting nexin 7 | NM_029655.3 | 64.7% | 69.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1074
- ORF length:
- 1008
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CATGAACTCC TTCAGCCCTA TGATGCCAAC ATCCCCTTTA TCAATGATAA 121 ACCAAATCAA GTTTGAGGAT GAACCAGATT TAAAGGATCT CTTCATCACA GTTGATGAAC 181 CTGAAAGTCA TGTTACTACA ATAGAAACTT TCATTACGTA TAGGATTATT ACTAAGACAT 241 CTCGTGGGGA ATTTGACTCC AGTGAATTTG AAGTTAGGAG ACGATATCAA GATTTCCTTT 301 GGTTGAAGGG AAAACTGGAA GAAGCACACC CCACTCTGAT TATTCCACCA TTGCCAGAAA 361 AGTTTATAGT AAAAGGAATG GTGGAACGCT TTAACGATGA CTTCATTGAG ACACGCAGGA 421 AGGCTTTACA TAAATTTTTG AACCGAATTG CTGATCATCC AACTTTAACA TTTAATGAAG 481 ACTTCAAAAT TTTTCTCACT GCACAAGCTT GGGAACTCTC TTCTCACAAG AAGCAAGGTC 541 CTGGCTTGCT AAGCAGGATG GGGCAAACCG TCAGAGCTGT TGCGTCCTCA ATGAGAGGAG 601 TTAAAAACCG CCCAGAGGAG TTCATGGAAA TGAATAACTT TATTGAACTA TTTAGCCAGA 661 AAATAAATTT GATAGATAAA ATATCTCAGA GAATTTATAA GGAAGAAAGG GAATATTTTG 721 ATGAAATGAA AGAATATGGC CCAATTCATA TTCTGTGGTC AGCGTCAGAA GAGGATCTGG 781 TTGATACTCT AAAGGATGTT GCCAGCTGCA TTGACAGATG CTGTAAGGCC ACTGAAAAGC 841 GGATGTCTGG ACTCTCAGAG GCCCTGCTTC CTGTTGTACA TGAGTACGTG CTTTATAGTG 901 AAATGTTAAT GGGTGTTATG AAAAGAAGAG ACCAAATACA AGCAGAACTG GATTCCAAAG 961 TTGAAGTTTT GACCTATAAA AAGGCAGATA CTGATCTGTG CCTTGCTACG TGGGAATCAT 1021 TCCTTACATC ACAGACCAAC CTTCACTTGG AAGAAGCCTC TGAAGATAAA CCTTACCCAA 1081 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac