Transcript: Mouse NM_001190156.1

Mus musculus sorting nexin 7 (Snx7), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Snx7 (76561)
Length:
2018
CDS:
32..1216

Additional Resources:

NCBI RefSeq record:
NM_001190156.1
NBCI Gene record:
Snx7 (76561)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001190156.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253173 TTGAAGTCAGGCGACGTTATC pLKO_005 408 CDS 100% 10.800 8.640 N Snx7 n/a
2 TRCN0000253175 CAACGTGAATTTGTGATATAA pLKO_005 1376 3UTR 100% 15.000 10.500 N Snx7 n/a
3 TRCN0000253174 ATCGCTGACCATCCCACTTTA pLKO_005 587 CDS 100% 13.200 9.240 N Snx7 n/a
4 TRCN0000265353 CTTGCAACATGGGAATCATTC pLKO_005 1142 CDS 100% 10.800 7.560 N Snx7 n/a
5 TRCN0000253176 TGATAAACCAGATCAAGTTTG pLKO_005 255 CDS 100% 10.800 7.560 N Snx7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001190156.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10507 pDONR223 100% 72.9% 78.9% None (many diffs) n/a
2 ccsbBroad304_10507 pLX_304 0% 72.9% 78.9% V5 (many diffs) n/a
3 TRCN0000466413 TGATTAATGCACCGATCGCGCCCA pLX_317 35.5% 72.9% 78.9% V5 (many diffs) n/a
4 ccsbBroadEn_11983 pDONR223 100% 64.5% 69.6% None (many diffs) n/a
5 ccsbBroad304_11983 pLX_304 0% 64.5% 69.6% V5 (many diffs) n/a
6 TRCN0000465597 CATACGACGACCCCTCAGTGATGG pLX_317 32.4% 64.5% 69.6% V5 (many diffs) n/a
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