Transcript: Human XM_017001428.1

PREDICTED: Homo sapiens sorting nexin 7 (SNX7), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SNX7 (51375)
Length:
1345
CDS:
110..1120

Additional Resources:

NCBI RefSeq record:
XM_017001428.1
NBCI Gene record:
SNX7 (51375)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001428.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000161560 GCCCAATTCATATTCTGTGGT pLKO.1 783 CDS 100% 2.640 2.112 N SNX7 n/a
2 TRCN0000323283 AGGAATGGTGGAACGCTTTAA pLKO_005 418 CDS 100% 13.200 9.240 N SNX7 n/a
3 TRCN0000323364 ATTGCTGATCATCCAACTTTA pLKO_005 491 CDS 100% 13.200 9.240 N SNX7 n/a
4 TRCN0000162493 CAGAAGAGGATCTGGTTGATA pLKO.1 810 CDS 100% 5.625 3.938 N SNX7 n/a
5 TRCN0000323290 CAGAAGAGGATCTGGTTGATA pLKO_005 810 CDS 100% 5.625 3.938 N SNX7 n/a
6 TRCN0000160597 CCAAAGTTATTCTTTCTGGAT pLKO.1 1168 3UTR 100% 2.640 1.848 N SNX7 n/a
7 TRCN0000323289 CCAAAGTTATTCTTTCTGGAT pLKO_005 1168 3UTR 100% 2.640 1.848 N SNX7 n/a
8 TRCN0000162492 CCACTCTGATTATTCCACCAT pLKO.1 375 CDS 100% 2.640 1.848 N SNX7 n/a
9 TRCN0000166387 CGTCCTCAATGAGAGGAGTTA pLKO.1 627 CDS 100% 0.495 0.347 N SNX7 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001428.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10507 pDONR223 100% 99.9% 100% None 951G>A n/a
2 ccsbBroad304_10507 pLX_304 0% 99.9% 100% V5 951G>A n/a
3 TRCN0000466413 TGATTAATGCACCGATCGCGCCCA pLX_317 35.5% 99.9% 100% V5 951G>A n/a
4 ccsbBroadEn_11983 pDONR223 100% 86.5% 86.5% None (many diffs) n/a
5 ccsbBroad304_11983 pLX_304 0% 86.5% 86.5% V5 (many diffs) n/a
6 TRCN0000465597 CATACGACGACCCCTCAGTGATGG pLX_317 32.4% 86.5% 86.5% V5 (many diffs) n/a
Download CSV