Construct: ORF ccsbBroadEn_10509

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013135.1_s300c1, BRDN0000386358
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM193B (54540)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54540 FAM193B family with sequence simila... NM_001366498.1 99.8% 99.5% 6G>N;1084T>C
2 human 54540 FAM193B family with sequence simila... NM_001366499.1 99.8% 99.5% 6G>N;1084T>C
3 human 54540 FAM193B family with sequence simila... XM_006714885.1 99.8% 99.5% 6G>N;1084T>C
4 human 54540 FAM193B family with sequence simila... XM_024446121.1 76.3% 76.1% 1_414del;420G>N;1498T>C
5 human 54540 FAM193B family with sequence simila... NM_001366500.1 56.6% 56.5% 1_1023del;1029G>N;2107T>C
6 human 54540 FAM193B family with sequence simila... XM_006714878.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
7 human 54540 FAM193B family with sequence simila... XM_006714879.3 56.6% 56.5% 1_1023del;1029G>N;2107T>C
8 human 54540 FAM193B family with sequence simila... XM_006714880.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
9 human 54540 FAM193B family with sequence simila... XM_011534580.2 56.6% 56.5% 1_1023del;1029G>N;2107T>C
10 human 54540 FAM193B family with sequence simila... XM_011534579.2 56.1% 55.9% 1_1047del;1053G>N;2131T>C
11 human 54540 FAM193B family with sequence simila... XM_011534574.2 54.2% 54.1% 1_1128del;1134G>N;2212T>C
12 human 54540 FAM193B family with sequence simila... XM_024446120.1 54.2% 54.1% 1_1128del;1134G>N;2212T>C
13 human 54540 FAM193B family with sequence simila... NM_001190946.3 52.4% 48.6% (many diffs)
14 human 54540 FAM193B family with sequence simila... XM_011534573.1 52.1% 51.9% 1_1230del;1236G>N;2314T>C
15 human 54540 FAM193B family with sequence simila... XM_011534572.1 51.5% 51.4% 1_1257del;1263G>N;2341T>C
16 human 54540 FAM193B family with sequence simila... XM_006714875.2 49.5% 49.4% 1_1362del;1368G>N;2446T>C
17 human 54540 FAM193B family with sequence simila... XR_941105.1 41.6% (many diffs)
18 human 54540 FAM193B family with sequence simila... XR_941104.1 41.6% (many diffs)
19 human 54540 FAM193B family with sequence simila... XR_427806.2 39.8% (many diffs)
20 human 54540 FAM193B family with sequence simila... XR_427804.2 24.1% (many diffs)
21 mouse 212483 Fam193b family with sequence simila... XM_006517198.2 64.5% 62% (many diffs)
22 mouse 212483 Fam193b family with sequence simila... XM_017315476.1 64.5% 62% (many diffs)
23 mouse 212483 Fam193b family with sequence simila... XM_017315477.1 64.5% 62% (many diffs)
24 mouse 212483 Fam193b family with sequence simila... XM_017315475.1 51.8% 49.8% (many diffs)
25 mouse 212483 Fam193b family with sequence simila... NM_145382.4 49.7% 47.8% (many diffs)
26 mouse 212483 Fam193b family with sequence simila... XM_006517197.1 49.7% 47.8% (many diffs)
27 mouse 212483 Fam193b family with sequence simila... XM_011244505.1 49.7% 47.8% (many diffs)
28 mouse 212483 Fam193b family with sequence simila... XM_006517195.1 46.8% 45.1% (many diffs)
29 mouse 212483 Fam193b family with sequence simila... XM_006517194.3 43.3% 41.7% (many diffs)
30 mouse 212483 Fam193b family with sequence simila... XR_001780770.1 36% (many diffs)
31 mouse 212483 Fam193b family with sequence simila... XR_382427.3 34.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1410
ORF length:
1344
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA NGGGGGCACC CTGGGCGGGA TCCCTGGGGA GCCCGCCGTG GACCACCGAG
121ATGTGGATGA GCTGCTGGAA TTCATCAACA GCACGGAGCC CAAAGTCCCC AACAGCGCCA
181GGGCCGCCAA GCGGGCCCGG CACAAGCTGA AAAAGAAGGA AAAGGAGAAG GCCCAGTTGG
241CAGCAGAAGC TCTAAAGCAG GCAAATCGTG TTTCTGGAAG CCGGGAGCCA AGGCCTGCCA
301GGGAGAGGCT CTTGGAGTGG CCCGACCGGG AACTGGATCG GGTCAACAGC TTCCTGAGCA
361GCCGTCTGCA GGAGATCAAA AACACTGTCA AAGACTCCAT CCGTGCCAGC TTCAGTGTGT
421GTGAGCTCAG CATGGACAGC AATGGCTTCT CTAAGGAGGG GGCTGCTGAG CCTGAGCCTC
481AGAGTCTACC CCCCTCAAAC CTCAGTGGCT CCTCAGAGCA GCAGCCTGAC ATCAACCTTG
541ACCTGTCCCC TTTGACTTTG GGCTCCCCTC AGAACCACAC GTTACAAGCT CCAGGCGAGC
601CAGCCCCACC ATGGGCAGAA ATGAGAGGCC CCCACCCACC ATGGACAGAG GTGAGGGGGC
661CCCCTCCCGG TATCGTCCCC GAGAACGGGC TCGTGAGGAG ACTCAACACC GTGCCCAACC
721TATCCCGGGT GATCTGGGTC AAGACACCCA AGCCGGGCTA CCCCAGCTCC GAGGAGCCAA
781GCTCAAAGGA AGTTCCCAGT TGCAAGCAGG AGCTGCCTGA GCCTGTGTCC TCAGGTGGGA
841AGCCACAGAA GGGCAAGAGG CAGGGCAGTC AGGCCAAGAA GAGCGAGGCA AGCCCAGCCC
901CCCGGCCCCC AGCCAGCCTA GAGGTTCCCA GTGCCAAGGG CCAGGTCGCT GGCCCCAAGC
961AGCCAGGCAG GGTCCTAGAG CTTCCCAAAG TAGGCAGCTG TGCTGAGGCT GGAGAGGGGA
1021GCCGGGGGAG CCGGCCAGGA CCAGGTTGGG CTGGCAGTCC CAAAACTGAG AAGGAGAAGG
1081GCAGCTCCTG GCGAAACTGG CCAGGCGAGG CCAAGGCACG GCCTCAGGAG CAGGAGTCTG
1141TGCAGCCCCC AGGCCCAGCA AGGCCACAGA GCTTGCCCCA GGGCAAGGGC CGCAGCCGCC
1201GGAGCCGCAA CAAGCAGGAG AAGCCAGCCT CCTCCTTGGA CGATGTGTTC CTGCCCAAGG
1261ACATGGACGG GGTGGAGATG GATGAGACTG ACCGAGAGGT GGAGTACTTT AAGAGGTTCT
1321GTTTGGATTC TGCAAAGCAG ACTCGTCAGA AAGTTGCTGT GAACTGGACC AACTTCAGCC
1381TCAAGAAAAC CACTCCTAGC ACAGCTCAGT GCCCAACTTT CTTGTACAAA GTtggcatta
1441taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)