Construct: ORF ccsbBroadEn_10522
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008337.1_s300c1, BRDN0000393867
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF767P (79970)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7988 | ZNF212 | zinc finger protein 212 | NM_012256.4 | 20.5% | 17.9% | (many diffs) |
| 2 | human | 155061 | ZNF746 | zinc finger protein 746 | NM_152557.5 | 17.5% | 16.4% | (many diffs) |
| 3 | human | 155061 | ZNF746 | zinc finger protein 746 | NM_001163474.1 | 17.5% | 16.4% | (many diffs) |
| 4 | human | 155061 | ZNF746 | zinc finger protein 746 | NM_001363517.2 | 17.4% | 17.2% | (many diffs) |
| 5 | human | 155061 | ZNF746 | zinc finger protein 746 | XM_005249955.2 | 17.3% | 17.2% | (many diffs) |
| 6 | human | 79970 | ZNF767P | zinc finger family member 7... | NR_027789.1 | 16.3% | (many diffs) | |
| 7 | human | 155061 | ZNF746 | zinc finger protein 746 | XM_011515838.1 | 15.7% | 14.5% | (many diffs) |
| 8 | human | 155061 | ZNF746 | zinc finger protein 746 | XM_005249957.1 | 15.5% | 15.4% | (many diffs) |
| 9 | human | 79970 | ZNF767P | zinc finger family member 7... | NR_027788.1 | 9.5% | (many diffs) | |
| 10 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_017321731.1 | 16.8% | 17.6% | (many diffs) |
| 11 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_017321730.1 | 16.7% | 17.6% | (many diffs) |
| 12 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_011241457.2 | 16.6% | 17.4% | (many diffs) |
| 13 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_011241456.2 | 16.6% | 17.4% | (many diffs) |
| 14 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_011241455.2 | 16.6% | 17.4% | (many diffs) |
| 15 | mouse | 69228 | Zfp746 | zinc finger protein 746 | NM_001347142.1 | 16% | 15.8% | (many diffs) |
| 16 | mouse | 69228 | Zfp746 | zinc finger protein 746 | NM_001163475.1 | 16% | 15.7% | (many diffs) |
| 17 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_006506559.3 | 15.8% | 15.6% | (many diffs) |
| 18 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_006506557.3 | 15.7% | 16.4% | (many diffs) |
| 19 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_011241454.2 | 15.6% | 16.3% | (many diffs) |
| 20 | mouse | 69228 | Zfp746 | zinc finger protein 746 | XM_006506556.3 | 15.5% | 16.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 420
- ORF length:
- 354
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGAGGCGGTC GCAGCTCCGA TTTCTCCGTG GACGATGGCA GCCACGATTC 121 AGGCCATGGA GAGGAAGATT GAATCGCAGG CTGCTCACCT GCTTTCCCTA GAAGGTCAAA 181 CCGGGATGGC CGAGAAGAAG CTGGCTGATT GCGAGAAGAC AGCCGTGGAG TTCGGGAACC 241 AGCTGGAGGG CAAGTGGGCC GTGCTGGGGA CCCTGCTGCA GGAGTACGGG CTGCTGCAGA 301 GGCGGCTGGA GAACGTGGAG AACCTGCTGC GCAACAGGAA CTTCTGGATC CTGCGGCTGC 361 CCCCAGGCAG CAAGGGGGAG TCCCCTAAGG TGCCTATGAC ATTTGATGAT GTGGCTGTGT 421 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 481 acgaac